RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 C1QTNF1Q9BXJ1 281 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 UGT2B28Q9BY64 529 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 NKX6-2Q9C056 277 aaPredicted RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 CIPCQ9C0C6 399 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 GPR88Q9GZN0 384 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ING2Q9H160 280 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 UPF3AQ9H1J1 476 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 CDC42EP4Q9H3Q1 356 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 LRRN3Q9H3W5 708 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 RNF122Q9H9V4 155 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 AGO4Q9HCK5 861 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 ADAP2Q9NPF8 381 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 IL1RAPQ9NPH3 570 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ENTPD7Q9NQZ7 604 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 DYRK4Q9NR20 520 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 SLC6A13Q9NSD5 602 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 TREX1Q9NSU2 369 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 POT1Q9NUX5 634 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 C14orf105Q9NVL8 296 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 SOHLH2Q9NX45 425 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 TAB2Q9NYJ8 693 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 RDH8Q9NYR8 311 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 RBAKQ9NYW8 714 aaPredicted RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 NLGN3Q9NZ94 848 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 TFCP2L1Q9NZI6 479 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 DNAJB9Q9UBS3 223 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 LPAR3Q9UBY5 353 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 SEC14L4Q9UDX3 406 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 ZNF639Q9UID6 485 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 RWDD2AQ9UIY3 292 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 PRPF19Q9UMS4 504 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 NDRG2Q9UN36 371 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 CORO2BQ9UQ03 480 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 DRG1Q9Y295 367 aaKnown RBP3.05□□□□□ -1.92
VPS35-208ENST00000568612 BTBD3Q9Y2F9 522 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 PLEKHA6Q9Y2H5 1048 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 SLC6A5Q9Y345 797 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 CLIC4Q9Y696 253 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 CROCCQ5TZA2 2017 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 FER1L4A9Z1Z3 1794 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 LTN1O94822 1766 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 LAMB2P55268 1798 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 KDM3BQ7LBC6 1761 aa3.05□□□□□ -1.92
VPS35-208ENST00000568612 MROH2AA6NES4 1674 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TOPAZ1Q8N9V7 1692 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 DEPDC5O75140 1603 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 DLG5Q8TDM6 1919 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TBC1D3KA0A087X1G2 549 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 NEMP2A6NFY4 417 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 A6NIZ1 184 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ASB14A6NK59 587 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 A6NLC8 198 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 WASHC1A8K0Z3 465 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TRDCB7Z8K6 153 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 WASH3PC4AMC7 463 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 F5H0A9 414 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 TSTD3H0UI37 97 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 H3BQ06 376 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 M0QYT0 321 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 AIPO00170 330 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SYT5O00445 386 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 KLF11O14901 512 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 BCAT2O15382 392 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 CHST10O43529 356 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SLC28A2O43868 658 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PQBP1O60828 265 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 PRDM1O75626 825 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PIAS1O75925 651 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SUPT7LO94864 414 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 WDR47O94967 919 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 KAT7O95251 611 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 NTSR2O95665 410 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 LATS1O95835 1130 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SERPING1P05155 500 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 OR2T7P0C7T2 308 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 NHLRC4P0CG21 123 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 MYL2P10916 166 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ARSBP15848 533 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ERCC2P18074 760 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 RHCEP18577 417 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 RAB3BP20337 219 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PVALBP20472 110 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 CA4P22748 312 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 EEF1B2P24534 225 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 ELK4P28324 431 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TLX1P31314 330 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 S100A11P31949 105 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CA5AP35218 305 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SLC1A2P43004 574 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PTGFRP43088 359 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PTGER3P43115 390 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 MAGEA6P43360 314 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 KCNJ3P48549 501 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CEBPDP49716 269 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 GMPSP49915 693 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 ARSEP51690 589 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 LUMP51884 338 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 ARL4CP56559 192 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CLDN8P56748 225 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 AP3S2P59780 193 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms