RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PMM1Q92871 262 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 NKD1Q969G9 470 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 PCSK5Q92824 1860 aa28.24■■■□□ 2.11
CTCF-203ENST00000566078 CASQ2O14958 399 aaPredicted RBP28.24■■■□□ 2.11
CTCF-203ENST00000566078 DEAF1O75398 565 aaPredicted RBP28.24■■■□□ 2.11
CTCF-203ENST00000566078 PEX2P28328 305 aa28.24■■■□□ 2.11
CTCF-203ENST00000566078 PRKAR1BP31321 381 aa28.24■■■□□ 2.11
CTCF-203ENST00000566078 CPEB4Q17RY0 729 aaKnown RBP eCLIP28.24■■■□□ 2.11
CTCF-203ENST00000566078 COMTD1Q86VU5 262 aa28.24■■■□□ 2.11
CTCF-203ENST00000566078 PRR22Q8IZ63 422 aa28.24■■■□□ 2.11
CTCF-203ENST00000566078 IL22RA1Q8N6P7 574 aa28.24■■■□□ 2.11
CTCF-203ENST00000566078 APOBEC4Q8WW27 367 aaKnown RBP28.24■■■□□ 2.11
CTCF-203ENST00000566078 TMBIM1Q969X1 311 aa28.24■■■□□ 2.11
CTCF-203ENST00000566078 EFHD2Q96C19 240 aaPredicted RBP28.24■■■□□ 2.11
CTCF-203ENST00000566078 A0A1W2PQ72 361 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 PRAMEF25A6NGN4 478 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 ACOX3O15254 700 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 DBIP07108 87 aaKnown RBP28.23■■■□□ 2.11
CTCF-203ENST00000566078 IL7RP16871 459 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 PUM1Q14671 1186 aaKnown RBP eCLIP28.23■■■□□ 2.11
CTCF-203ENST00000566078 LARS2Q15031 903 aaKnown RBP28.23■■■□□ 2.11
CTCF-203ENST00000566078 EXT1Q16394 746 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 MAPK14Q16539 360 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 DHRS4L2Q6PKH6 230 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 NDUFAF7Q7L592 441 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 PIWIL3Q7Z3Z3 882 aaKnown RBP28.23■■■□□ 2.11
CTCF-203ENST00000566078 ICA1LQ8NDH6 482 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 NUBPLQ8TB37 319 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 HSPBAP1Q96EW2 488 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 CENPNQ96H22 339 aaPredicted RBP28.23■■■□□ 2.11
CTCF-203ENST00000566078 VPS50Q96JG6 964 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 IMMP1LQ96LU5 166 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 FAM117AQ9C073 453 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 LIN28AQ9H9Z2 209 aaKnown RBP28.23■■■□□ 2.11
CTCF-203ENST00000566078 THSD1Q9NS62 852 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 DNAJB9Q9UBS3 223 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 KCNE5Q9UJ90 142 aa28.23■■■□□ 2.11
CTCF-203ENST00000566078 MRPS18BQ9Y676 258 aaKnown RBP28.23■■■□□ 2.11
CTCF-203ENST00000566078 NSG1A0A0A6YYJ2 146 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 TO15178 435 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 UGT2B17O75795 530 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 DIRAS1O95057 198 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 EPPINO95925 133 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 THBS1P07996 1170 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 SDHBP21912 280 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 KCNC4Q03721 635 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 LIN52Q52LA3 116 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 AP1ARQ63HQ0 302 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 ZNF836Q6ZNA1 936 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 CARM1Q86X55 608 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 OR8K3Q8NH51 312 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 VANGL1Q8TAA9 524 aaPredicted RBP28.22■■■□□ 2.11
CTCF-203ENST00000566078 THAP3Q8WTV1 239 aaPredicted RBP28.22■■■□□ 2.11
CTCF-203ENST00000566078 KCND3Q9UK17 655 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 MRTO4Q9UKD2 239 aaKnown RBP28.22■■■□□ 2.11
CTCF-203ENST00000566078 SLC13A4Q9UKG4 626 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 ZNF232Q9UNY5 417 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 PCDHGA10Q9Y5H3 936 aa28.22■■■□□ 2.11
CTCF-203ENST00000566078 IL33O95760 270 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 IFNW1P05000 195 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 GCKP35557 465 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 PLCXD2Q0VAA5 305 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 IL10RAQ13651 578 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 DTX1Q86Y01 620 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 SLC34A3Q8N130 599 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 TP53INP1Q96A56 240 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 BDH2Q9BUT1 245 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 AMBRA1Q9C0C7 1298 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 ZNF160Q9HCG1 818 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 GNGT2O14610 69 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 ZFAND5O76080 213 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 DXOO77932 396 aaKnown RBP28.21■■■□□ 2.11
CTCF-203ENST00000566078 LGI1O95970 557 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 DCTP40126 519 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 PSMD4P55036 377 aaKnown RBP28.21■■■□□ 2.11
CTCF-203ENST00000566078 LRRC36Q1X8D7 754 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 IQCCQ4KMZ1 466 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 PLAG1Q6DJT9 500 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 OR5L2Q8NGL0 311 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 ELP5Q8TE02 316 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 PCDHGA6Q9Y5G7 932 aa28.21■■■□□ 2.11
CTCF-203ENST00000566078 M0R3H8 397 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 SYT5O00445 386 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 CELA2AP08217 269 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 VHLP40337 213 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 RNF144AP50876 292 aaPredicted RBP28.2■■■□□ 2.1
CTCF-203ENST00000566078 CAMK2BQ13554 666 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 PDZK1Q5T2W1 519 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 OGFRL1Q5TC84 451 aaPredicted RBP28.2■■■□□ 2.1
CTCF-203ENST00000566078 TSEN54Q7Z6J9 526 aaKnown RBP28.2■■■□□ 2.1
CTCF-203ENST00000566078 PACS2Q86VP3 889 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 OR4D11Q8NGI4 311 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 M1APQ8TC57 530 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 DIO2Q92813 273 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 NDUFAF4Q9P032 175 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 SLC9A8Q9Y2E8 581 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 CHST2Q9Y4C5 530 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 AK5Q9Y6K8 562 aa28.2■■■□□ 2.1
CTCF-203ENST00000566078 CLDN24A6NM45 220 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 NID1P14543 1247 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms