RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 WNT2BQ93097 391 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 PPCDCQ96CD2 204 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 ZBED6CLQ96FA7 236 aaPredicted RBP13.46□□□□□ -0.25
CLN3-213ENST00000565047 DSN1Q9H410 356 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 SLC24A3Q9HC58 644 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 MED11Q9P086 117 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 SH3BP4Q9P0V3 963 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 DOCK7Q96N67 2140 aa13.46□□□□□ -0.26
CLN3-213ENST00000565047 PCNX3Q9H6A9 2034 aa13.46□□□□□ -0.26
CLN3-213ENST00000565047 CCDC168Q8NDH2 2452 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 CLCA1A8K7I4 914 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 DVL2O14641 736 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 SCO2O43819 266 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 UTS2O95399 124 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 DHRS4L1P0CG22 281 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 LAMP1P11279 417 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 ASMTP46597 345 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 MANFP55145 182 aaKnown RBP13.45□□□□□ -0.26
CLN3-213ENST00000565047 MPP2Q14168 576 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 MFSD12Q6NUT3 480 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 AAGABQ6PD74 315 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 ENPP6Q6UWR7 440 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 ZAR1Q86SH2 424 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 EXOC3L1Q86VI1 746 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 RIMKLAQ8IXN7 391 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 DDIASQ8IXT1 998 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 CDRT4Q8N9R6 151 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 SLC16A11Q8NCK7 471 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 OR4C3Q8NH37 302 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 DUSP19Q8WTR2 217 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 COQ8BQ96D53 544 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 C16orf58Q96GQ5 468 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 PPP3R2Q96LZ3 170 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 ZNF559Q9BR84 538 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 C20orf27Q9GZN8 174 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 ZNF395Q9H8N7 513 aaPredicted RBP13.45□□□□□ -0.26
CLN3-213ENST00000565047 CRIM1Q9NZV1 1036 aa13.45□□□□□ -0.26
CLN3-213ENST00000565047 RPH3AQ9Y2J0 694 aaPredicted RBP13.45□□□□□ -0.26
CLN3-213ENST00000565047 SCAMP2O15127 329 aaKnown RBP13.44□□□□□ -0.26
CLN3-213ENST00000565047 ITM2AO43736 263 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 PEX11AO75192 247 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 KCNK2O95069 426 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 TGM6O95932 706 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 NGFRP08138 427 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 EFNA1P20827 205 aaPredicted RBP13.44□□□□□ -0.26
CLN3-213ENST00000565047 OPRM1P35372 400 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 SERPINB4P48594 390 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 SRYQ05066 204 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 RCAN2Q14206 197 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 PTGR1Q14914 329 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 ZNHIT3Q15649 155 aaPredicted RBP13.44□□□□□ -0.26
CLN3-213ENST00000565047 DUSP5Q16690 384 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.44□□□□□ -0.26
CLN3-213ENST00000565047 GRAMD1BQ3KR37 738 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 ZCCHC12Q6PEW1 402 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 LRIG3Q6UXM1 1119 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 CDH24Q86UP0 819 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 OR7A2PQ8NGA2 310 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 CEP70Q8NHQ1 597 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 AGR3Q8TD06 166 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 FAM120BQ96EK7 910 aaKnown RBP13.44□□□□□ -0.26
CLN3-213ENST00000565047 C1GALT1C1Q96EU7 318 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 SFXN2Q96NB2 322 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 ZFP3Q96NJ6 502 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 SSU72Q9NP77 194 aaKnown RBP13.44□□□□□ -0.26
CLN3-213ENST00000565047 EQTNQ9NQ60 294 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 SDHAF3Q9NRP4 125 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 FBXO34Q9NWN3 711 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 PPP4R1LQ9P1A2 415 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 FOXD3Q9UJU5 478 aaPredicted RBP13.44□□□□□ -0.26
CLN3-213ENST00000565047 ZNF337Q9Y3M9 751 aa13.44□□□□□ -0.26
CLN3-213ENST00000565047 HIVEP1P15822 2718 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 HRNRQ86YZ3 2850 aaPredicted RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 ALG1L2C9J202 215 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 H0Y3Z8 333 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 H0YC42 278 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 EMC8O43402 210 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 TNFSF13O75888 250 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 ANGPTL1O95841 491 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 TMIGD3P0DMS9 266 aaPredicted RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 UQCRC1P31930 480 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 GPC1P35052 558 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 GCKP35557 465 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 PEX19P40855 299 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 KIR2DL3P43628 341 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 SUCLG1P53597 346 aaKnown RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 PRKAG1P54619 331 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 PSMD4P55036 377 aaKnown RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 DIO3P55073 304 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 TPD52P55327 224 aaPredicted RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 C21orf58P58505 322 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 GANABQ14697 944 aaKnown RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 DAZAP2Q15038 168 aaPredicted RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 GLYR1Q49A26 553 aaPredicted RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 R3HCC1LQ7Z5L2 792 aaKnown RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 OR4K17Q8NGC6 315 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 ZFP28Q8NHY6 868 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 GPR151Q8TDV0 419 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 NRGNQ92686 78 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms