RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PRKAA2P54646 552 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 FOXA1P55317 472 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 LCP2Q13094 533 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 PON3Q15166 354 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 CYP27C1Q4G0S4 372 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 SPDYAQ5MJ70 313 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 LGSNQ5TDP6 509 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 TIFABQ6ZNK6 161 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 PERPQ96FX8 193 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 CCL19Q99731 98 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 RNF122Q9H9V4 155 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 SDHAF3Q9NRP4 125 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 ELOVL5Q9NYP7 299 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 C19orf53Q9UNZ5 99 aaPredicted RBP15.18■□□□□ 0.02
CLN3-211ENST00000564091 A0A087WV62 115 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 TRIM64A6NGJ6 449 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 TRIM64BA6NI03 449 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 GOLGA8RI6L899 631 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 UPK1AO00322 258 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 ENO1P06733 434 aaKnown RBP15.17■□□□□ 0.02
CLN3-211ENST00000564091 GANABQ14697 944 aaKnown RBP15.17■□□□□ 0.02
CLN3-211ENST00000564091 DECR1Q16698 335 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 EXOC3L2Q2M3D2 409 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 YTHDF3Q7Z739 585 aaKnown RBP15.17■□□□□ 0.02
CLN3-211ENST00000564091 MMGT1Q8N4V1 131 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 C1GALT1C1Q96EU7 318 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 MARK4Q96L34 752 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 KLHL4Q9C0H6 718 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 GLIPR2Q9H4G4 154 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 PTGES2Q9H7Z7 377 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 MIEF1Q9NQG6 463 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 DDX18Q9NVP1 670 aaKnown RBP15.17■□□□□ 0.02
CLN3-211ENST00000564091 NFU1Q9UMS0 254 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 PROCRQ9UNN8 238 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 ZNF175Q9Y473 711 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 POLR3HQ9Y535 204 aaPredicted RBP15.17■□□□□ 0.02
CLN3-211ENST00000564091 TLN2Q9Y4G6 2542 aa15.17■□□□□ 0.02
CLN3-211ENST00000564091 FAM171A2A8MVW0 826 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 UBFD1O14562 309 aaKnown RBP15.16■□□□□ 0.02
CLN3-211ENST00000564091 AQP8O94778 261 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 PSMG1O95456 288 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 IL33O95760 270 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 CD8BP10966 210 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 FPR1P21462 350 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 LOXP28300 417 aaPredicted RBP15.16■□□□□ 0.02
CLN3-211ENST00000564091 PCSK6P29122 969 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 PKNOX1P55347 436 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 ZNF763Q0D2J5 394 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 WHAMMP3Q1A5X7 153 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 FAM71E1Q6IPT2 247 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 PPP4R4Q6NUP7 873 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 APOOLQ6UXV4 268 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 OR2L13Q8N349 312 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 PPP1R14CQ8TAE6 165 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 NUDT8Q8WV74 236 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 ELP4Q96EB1 424 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 L3HYPDHQ96EM0 354 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 GSTO2Q9H4Y5 243 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 Q9N2J8 555 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 MID1IP1Q9NPA3 183 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 FAM120CQ9NX05 1096 aaKnown RBP15.16■□□□□ 0.02
CLN3-211ENST00000564091 SIRT5Q9NXA8 310 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 CLEC4AQ9UMR7 237 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 ABCG2Q9UNQ0 655 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 ARID1AO14497 2285 aa15.16■□□□□ 0.02
CLN3-211ENST00000564091 ANK3Q12955 4377 aaKnown RBP15.16■□□□□ 0.02
CLN3-211ENST00000564091 ROS1P08922 2347 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 GXYLT2A0PJZ3 443 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 CCDC151A5D8V7 595 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 LINC01387J3KSC0 135 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 UTS2O95399 124 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 GABRA3P34903 492 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 SLC6A8P48029 635 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 CLK3P49761 638 aaKnown RBP15.15■□□□□ 0.02
CLN3-211ENST00000564091 RPS3AP61247 264 aaKnown RBP15.15■□□□□ 0.02
CLN3-211ENST00000564091 GUSBP1Q15486 140 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 SGCBQ16585 318 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 PRSS57Q6UWY2 283 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 FAM214BQ7L5A3 538 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 PRIMA1Q86XR5 153 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 SLC22A9Q8IVM8 553 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 METTL25Q8N6Q8 603 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 CCNYL1Q8N7R7 359 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLN3-211ENST00000564091 AMDHD1Q96NU7 426 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 SHCBP1LQ9BZQ2 653 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 TAS2R7Q9NYW3 318 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 GRID1Q9ULK0 1009 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 STK38LQ9Y2H1 464 aa15.15■□□□□ 0.02
CLN3-211ENST00000564091 SERTM1A2A2V5 107 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 ANGPTL1O95841 491 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 IGKV1D-16P01601 117 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 OPN1LWP04000 364 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 THBDP07204 575 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 TBXA2RP21731 343 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 NTSP30990 170 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 GSTM5P46439 218 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 FGFBP1Q14512 234 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 ZNHIT3Q15649 155 aaPredicted RBP15.14■□□□□ 0.01
CLN3-211ENST00000564091 IMPG1Q17R60 797 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms