RNA–Protein interactions for RNA: ENST00000562310.1

COMMD4-205, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-205ENST00000562310 SEMA4CQ9C0C4 833 aa13.23□□□□□ -0.29
COMMD4-205ENST00000562310 AMBRA1Q9C0C7 1298 aa13.23□□□□□ -0.29
COMMD4-205ENST00000562310 USE1Q9NZ43 259 aa13.23□□□□□ -0.29
COMMD4-205ENST00000562310 PADI1Q9ULC6 663 aa13.23□□□□□ -0.29
COMMD4-205ENST00000562310 RAB26Q9ULW5 256 aa13.23□□□□□ -0.29
COMMD4-205ENST00000562310 LRCH1Q9Y2L9 728 aa13.23□□□□□ -0.29
COMMD4-205ENST00000562310 LOC102723996A0A087X1L8 192 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 PRAMEF25A6NGN4 478 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 PDLIM1O00151 329 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 TO15178 435 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 RRM2P31350 389 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 FOLR3P41439 243 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 EPS8Q12929 822 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 WLSQ5T9L3 541 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 ZNF836Q6ZNA1 936 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 TSEN54Q7Z6J9 526 aaKnown RBP13.22□□□□□ -0.29
COMMD4-205ENST00000562310 ZNF605Q86T29 641 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 SLCO6A1Q86UG4 719 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 VRK2Q86Y07 508 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 C9orf40Q8IXQ3 194 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 CMIPQ8IY22 773 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 ESX1Q8N693 406 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 BCORP1Q8N888 145 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 ZNF321PQ8N8H1 164 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 NFAM1Q8NET5 270 aaPredicted RBP13.22□□□□□ -0.29
COMMD4-205ENST00000562310 OR8K3Q8NH51 312 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 SLC35B4Q969S0 331 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 ADIPOR1Q96A54 375 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 HSPBAP1Q96EW2 488 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 SLC29A1Q99808 456 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 POLR2J2Q9GZM3 115 aaKnown RBP13.22□□□□□ -0.29
COMMD4-205ENST00000562310 WWTR1Q9GZV5 400 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 HOXD1Q9GZZ0 328 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 QRSL1Q9H0R6 528 aaKnown RBP13.22□□□□□ -0.29
COMMD4-205ENST00000562310 POLR2J3Q9H1A7 115 aaKnown RBP13.22□□□□□ -0.29
COMMD4-205ENST00000562310 KCND3Q9UK17 655 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 PTRH2Q9Y3E5 179 aaKnown RBP13.22□□□□□ -0.29
COMMD4-205ENST00000562310 LYVE1Q9Y5Y7 322 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 NINQ8N4C6 2090 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 VPS13AQ96RL7 3174 aa13.22□□□□□ -0.29
COMMD4-205ENST00000562310 M0R3H8 397 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 TNFRSF11BO00300 401 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 DIRAS1O95057 198 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 IL33O95760 270 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 UQCRBP14927 111 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 IFNA8P32881 189 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 GPR143P51810 404 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 CLDN6P56747 220 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 RGS8P57771 180 aaPredicted RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 EEF1A1P68104 462 aaKnown RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 ZNF141Q15928 474 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 RFX4Q33E94 735 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 C3orf38Q5JPI3 329 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 OTUD3Q5T2D3 398 aaPredicted RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 HSDL2Q6YN16 418 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 DEF8Q6ZN54 512 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 TMPRSS12Q86WS5 348 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 ZNF527Q8NB42 609 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 PIK3C3Q8NEB9 887 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 VANGL1Q8TAA9 524 aaPredicted RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 NUBPLQ8TB37 319 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 TP53INP1Q96A56 240 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 NAF1Q96HR8 494 aaKnown RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 DHRS1Q96LJ7 313 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 PRRC1Q96M27 445 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 GAL3ST4Q96RP7 486 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 NXF5Q9H1B4 397 aaKnown RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 SMPD3Q9NY59 655 aaPredicted RBP13.21□□□□□ -0.29
COMMD4-205ENST00000562310 VNN3Q9NY84 501 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 ACAD8Q9UKU7 415 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 TESMINQ9Y4I5 508 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 ORC6Q9Y5N6 252 aa13.21□□□□□ -0.29
COMMD4-205ENST00000562310 SPAARA0A1B0GVQ0 90 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 A0A1W2PQ72 361 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 ARRDC5A6NEK1 342 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 C9orf172C9J069 976 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 NPIPB9F8W1W9 429 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 AP3D1O14617 1153 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 UGT2B17O75795 530 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 KLF7O75840 302 aaPredicted RBP13.2□□□□□ -0.3
COMMD4-205ENST00000562310 GADD45GO95257 159 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 EPPINO95925 133 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 IGKV1D-16P01601 117 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 ALPLP05186 524 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 CEACAM1P13688 526 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 KRT20P35900 424 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 IST1P53990 364 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 ATP12AP54707 1039 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 CDH12P55289 794 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 SLC26A5P58743 744 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 PPP2R2BQ00005 443 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 NNATQ16517 81 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 COLEC12Q5KU26 742 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 TCTN3Q6NUS6 607 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 FAM199XQ6PEV8 388 aaPredicted RBP13.2□□□□□ -0.3
COMMD4-205ENST00000562310 RANBP3LQ86VV4 465 aaPredicted RBP13.2□□□□□ -0.3
COMMD4-205ENST00000562310 TAGAPQ8N103 731 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 SLC34A3Q8N130 599 aa13.2□□□□□ -0.3
COMMD4-205ENST00000562310 ZNF441Q8N8Z8 693 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms