RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 FGFR1OPO95684 399 aaKnown RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 KRT5P13647 590 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 ZNF10P21506 573 aaPredicted RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 IL10P22301 178 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 RPA1P27694 616 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 PRDX6P30041 224 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 RPL9P32969 192 aaKnown RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 ALDH3B1P43353 468 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 ACADSBP45954 432 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 NDUFV3P56181 108 aaKnown RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 NCBP1Q09161 790 aaKnown RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 KLF5Q13887 457 aaPredicted RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 SHHQ15465 462 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 CARTPTQ16568 116 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 CCL14Q16627 93 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 MS4A18Q3C1V0 323 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 LRRC23Q53EV4 343 aaPredicted RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 CCDC122Q5T0U0 273 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 BEND3Q5T5X7 828 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 CCBE1Q6UXH8 406 aaPredicted RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 GPR142Q7Z601 462 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 SLC7A5P1Q8MH63 180 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 GVQW1Q8N7I0 195 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 CHDHQ8NE62 594 aaPredicted RBP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 NABP1Q96AH0 204 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 LRRC45Q96CN5 670 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 TBC1D31Q96DN5 1066 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 SAMD8Q96LT4 415 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 ZNF599Q96NL3 588 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 RCHY1Q96PM5 261 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 FAM111AQ96PZ2 611 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 DCTN5Q9BTE1 182 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 OSBPL10Q9BXB5 764 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 TRIM4Q9C037 500 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 KRT23Q9C075 422 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 LIME1Q9H400 295 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.8□□□□□ -1.8
PRPF39-212ENST00000557477 COL6A3P12111 3177 aa3.8□□□□□ -1.8
PRPF39-212ENST00000557477 LAMA3Q16787 3333 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 MEI4A8MW99 385 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 C19orf81C9J6K1 198 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 H7C423 109 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 SH2D1BO14796 132 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 B3GALNT1O75752 331 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 OR6B1O95007 311 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 PROS1P07225 676 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ASNSP08243 561 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 UBTFL1P0CB47 393 aaPredicted RBP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 TRIM49P0CI25 452 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 TRIM49CP0CI26 452 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 GNSP15586 552 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 CCNA2P20248 432 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 CAMLGP49069 296 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ATP4BP51164 291 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 SLC8A3P57103 927 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ARPC4P59998 168 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 SSTP61278 116 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ERVK11-1P61568 191 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 RPS4XP62701 263 aaKnown RBP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 CTAG1AP78358 180 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 KARSQ15046 597 aaKnown RBP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ZNF528Q3MIS6 628 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 RABL6Q3YEC7 729 aaPredicted RBP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 TOR1AIP1Q5JTV8 583 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 C1orf189Q5VU69 101 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 LIPKQ5VXJ0 399 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 HIST2H2AA3Q6FI13 130 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 STEAP1BQ6NZ63 245 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 DOK6Q6PKX4 331 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 FAM131BQ86XD5 332 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ZNRF1Q8ND25 227 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 SUN5Q8TC36 379 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ACMSDQ8TDX5 336 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 CHPT1Q8WUD6 406 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 CTNNBL1Q8WYA6 563 aaPredicted RBP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 TMEM45BQ96B21 275 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 PORCNQ9H237 461 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 HPS4Q9NQG7 708 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 DEPPQ9NTK1 212 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 AATFQ9NY61 560 aaKnown RBP eCLIP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 VPS54Q9P1Q0 977 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ERVK-18Q9QC07 812 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 TBK1Q9UHD2 729 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ZNF346Q9UL40 294 aaKnown RBP3.79□□□□□ -1.8
PRPF39-212ENST00000557477 PLA2G4CQ9UP65 541 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 PRELID1Q9Y255 219 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 KLHDC2Q9Y2U9 406 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 SLC6A5Q9Y345 797 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 TMED5Q9Y3A6 229 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ATG4BQ9Y4P1 393 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 ALPK3Q96L96 1907 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 UNC80Q8N2C7 3258 aa3.79□□□□□ -1.8
PRPF39-212ENST00000557477 IGLV4-3A0A075B6K6 122 aa3.78□□□□□ -1.8
PRPF39-212ENST00000557477 IGLON5A6NGN9 336 aa3.78□□□□□ -1.8
PRPF39-212ENST00000557477 ATP8B1O43520 1251 aa3.78□□□□□ -1.8
PRPF39-212ENST00000557477 DCXO43602 365 aa3.78□□□□□ -1.8
PRPF39-212ENST00000557477 DUSP11O75319 330 aaKnown RBP3.78□□□□□ -1.8
PRPF39-212ENST00000557477 PTBP3O95758 552 aaKnown RBP3.78□□□□□ -1.8
PRPF39-212ENST00000557477 PDGFBP01127 241 aaPredicted RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms