RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 DNASE1P24855 282 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 WASP42768 502 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 KCNJ5P48544 419 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ATP12AP54707 1039 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 KIAA1024LP59773 190 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CTAG1AP78358 180 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 IRF5Q13568 498 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ZSWIM7Q19AV6 140 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 DEFB115Q30KQ5 88 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 HIST2H2AA3Q6FI13 130 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 LRFN4Q6PJG9 635 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 NLRC3Q7RTR2 1065 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ADGRG3Q86Y34 549 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 FTMTQ8N4E7 242 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 OR2T4Q8NH00 348 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 OR51Q1Q8NH59 317 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 RFT1Q96AA3 541 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 DACT3Q96B18 629 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF707Q96C28 371 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ORAI1Q96D31 301 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ZFP3Q96NJ6 502 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 NLNQ9BYT8 704 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ENKD1Q9H0I2 346 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CWH43Q9H720 699 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 AUNIPQ9H7T9 357 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 DDX31Q9H8H2 851 aaKnown RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 LIN7BQ9HAP6 207 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 FOLH1BQ9HBA9 442 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 POLMQ9NP87 494 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 EMC7Q9NPA0 242 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 PLAGL1Q9UM63 463 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ANGPT4Q9Y264 503 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 KCNE3Q9Y6H6 103 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 A0A087WUU8 490 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 PIPSLA2A3N6 862 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF593O00488 134 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 PRODHO43272 600 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 GMDSO60547 372 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 GREM1O60565 184 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 LEFTY1O75610 366 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 POP4O95707 220 aaKnown RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 LPLP06858 475 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ACP5P13686 325 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 DRD2P14416 443 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ATP5A1P25705 553 aaKnown RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 HLA-FP30511 346 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 TRIM23P36406 574 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 GPR1P46091 355 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 BTG1P62324 171 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CAP1Q01518 475 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 IKZF1Q13422 519 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 DSG2Q14126 1118 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 COL28A1Q2UY09 1125 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 SPIN4Q56A73 249 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CDKL4Q5MAI5 379 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 LY6G5CQ5SRR4 150 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CCNJQ5T5M9 372 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 STPG1Q5TH74 334 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 GARNL3Q5VVW2 1013 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 SFRP4Q6FHJ7 346 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 SLC8B1Q6J4K2 584 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 FAAP20Q6NZ36 180 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 DGLUCYQ7Z3D6 616 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 HSD11B1LQ7Z5J1 315 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 RASGRP3Q8IV61 690 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 C17orf47Q8NEP4 570 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 OR5M3Q8NGP4 307 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 C2orf15Q8WU43 125 aaKnown RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF480Q8WV37 535 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 YIPF5Q969M3 257 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 FAM46AQ96IP4 442 aaKnown RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 COQ10AQ96MF6 247 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 IL17FQ96PD4 163 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 HCAR1Q9BXC0 346 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 KLF16Q9BXK1 252 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CACNG6Q9BXT2 260 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 TTTY10Q9BZA0 68 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 GSX2Q9BZM3 304 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 SHARPINQ9H0F6 387 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 OR2AG1Q9H205 316 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 RANBP3Q9H6Z4 567 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 BRF2Q9HAW0 419 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CAPN10Q9HC96 672 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 FGF20Q9NP95 211 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 DMRT3Q9NQL9 472 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 SIRT3Q9NTG7 399 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-214ENST00000552783 SDHAF2Q9NX18 166 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 UBQLN2Q9UHD9 624 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 ACAD8Q9UKU7 415 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 CCL26Q9Y258 94 aa4.55□□□□□ -1.68
LIMA1-214ENST00000552783 A0A0G2JK05 382 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SLC9B1P1A6NJY1 282 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 LEFTY2O00292 366 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SOX30O94993 753 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PCDH8O95206 1070 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SOD2P04179 222 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SULT1A3P0DMM9 295 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SULT1A4P0DMN0 295 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TYRP14679 529 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms