RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MGAT4CQ9UBM8 478 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 TMPRSS11EQ9UL52 423 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PLAGL1Q9UM63 463 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 MGAT4BQ9UQ53 548 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 FKBP7Q9Y680 259 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 FAM183AA6NL82 134 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 WASHC1A8K0Z3 465 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 H7C4K7 107 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SPDEFO95238 335 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CPNE6O95741 557 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ALDOBP05062 364 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ELFN1P0C7U0 828 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 HOXB6P17509 224 aaKnown RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SDC1P18827 310 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 HK1P19367 917 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 NRIP1P48552 1158 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PSMD8P48556 350 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SCRN3Q0VDG4 424 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PRRT3Q5FWE3 981 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SYT6Q5T7P8 510 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PLAG1Q6DJT9 500 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 KDELC1Q6UW63 502 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ALKAL2Q6UX46 152 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 Q6ZVL8 140 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF767PQ75MW2 155 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 KRT77Q7Z794 578 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CXorf67Q86X51 503 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PHYKPLQ8IUZ5 450 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 IQCF2Q8IXL9 164 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SYT14Q8NB59 555 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CHST4Q8NCG5 386 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 TOR1AIP2Q8NFQ8 470 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 OR51A7Q8NH64 312 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 RPLP0P6Q8NHW5 317 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PIGXQ8TBF5 258 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 BCL7CQ8WUZ0 217 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SLC7A6Q92536 515 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 MBOAT4Q96T53 435 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 RAD9AQ99638 391 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SLC29A3Q9BZD2 475 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ACPTQ9BZG2 426 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 GORASP2Q9H8Y8 452 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 NMNAT1Q9HAN9 279 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 AKIP1Q9NQ31 210 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SPG21Q9NZD8 308 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ABCD2Q9UBJ2 740 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SARDHQ9UL12 918 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 STUB1Q9UNE7 303 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SIT1Q9Y3P8 196 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CACNA1IQ9P0X4 2223 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 WDFY4Q6ZS81 3184 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF106Q9H2Y7 1883 aaKnown RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 UPK1AO00322 258 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PTGESO14684 152 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SLC9A3R1O14745 358 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PROM1O43490 865 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PRAMEF11O60813 436 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 OR6A2O95222 327 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 WISP3O95389 354 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 RPS17P08708 135 aaKnown RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 APEHP13798 732 aaKnown RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 JUNBP17275 347 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 TGM1P22735 817 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 GIFP27352 417 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PTPN6P29350 595 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 GGT2P36268 569 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CDH4P55283 916 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 TEKQ02763 1124 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 FCN2Q15485 313 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SCGB2B2Q4G0G5 96 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CDKL4Q5MAI5 379 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 RAB12Q6IQ22 244 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 PAQR6Q6TCH4 344 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 DLEU7Q6UYE1 221 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 OLIG3Q7RTU3 272 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CEACAM19Q7Z692 300 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 DNAJC22Q8N4W6 341 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 OXR1Q8N573 874 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 VN1R2Q8NFZ6 395 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 OR8J1Q8NGP2 316 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SLC5A11Q8WWX8 675 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 POP5Q969H6 163 aaKnown RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 C16orf92Q96LL3 132 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 SAMD11Q96NU1 681 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 NIPSNAP1Q9BPW8 284 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF471Q9BX82 626 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 MRM3Q9HC36 420 aaKnown RBP5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ADAP2Q9NPF8 381 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 GLTPQ9NZD2 209 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 CFAP97Q9P2B7 532 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 TICRRQ7Z2Z1 1910 aa5.16□□□□□ -1.58
LIMA1-203ENST00000547825 ARPC4-TTLL3A0A0A6YYG9 625 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 CIB4A0PJX0 185 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 OR14I1A6ND48 311 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 NEDD8-MDP1E9PL57 170 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 M0R3H8 397 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 MUSKO15146 869 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF432O94892 652 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 PRSS23O95084 383 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms