RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 RDH8Q9NYR8 311 aa13.31□□□□□ -0.28
SRP54-202ENST00000546080 NFKBIL1Q9UBC1 381 aaPredicted RBP13.31□□□□□ -0.28
SRP54-202ENST00000546080 TMEM5Q9Y2B1 443 aa13.31□□□□□ -0.28
SRP54-202ENST00000546080 CARNS1A5YM72 827 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 M0R233 179 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SOCS6O14544 535 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 PAICSP22234 425 aaKnown RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 F8A1P23610 371 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 OMPP47874 163 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 CCR6P51684 374 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 PRKAG1P54619 331 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 VSX2P58304 361 aaPredicted RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 RIPPLY1Q0D2K3 151 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 CHMP1BQ7LBR1 199 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 TRAPPC5Q8IUR0 188 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SRFBP1Q8NEF9 429 aaKnown RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 BEST4Q8NFU0 473 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 OR2A12Q8NGT7 310 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SETD7Q8WTS6 366 aaKnown RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 IL17FQ96PD4 163 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 YIPF4Q9BSR8 244 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 JAM3Q9BX67 310 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 VN1R3Q9BXE9 311 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 BCL2L10Q9HD36 194 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 ACSS1Q9NUB1 689 aaPredicted RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 BABAM2Q9NXR7 383 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SLC13A4Q9UKG4 626 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 ITM2BQ9Y287 266 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SIRT4Q9Y6E7 314 aaPredicted RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 A0A1W2PPL8 197 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SLC9B1P1A6NJY1 282 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SLC9A3R1O14745 358 aaPredicted RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 HOXA2O43364 376 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 LEFTY1O75610 366 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 SLC2A10O95528 541 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 NTN1O95631 604 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 TBX6O95947 436 aaPredicted RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 FGBP02675 491 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 LCN1P31025 176 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 STAT5AP42229 794 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 RPL6Q02878 288 aaKnown RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 FZD5Q13467 585 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 ZNF697Q5TEC3 545 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 GARNL3Q5VVW2 1013 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 FAM129CQ86XR2 697 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 GJD3Q8N144 294 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 MS4A15Q8N5U1 240 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 RPLP0P6Q8NHW5 317 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 POF1BQ8WVV4 589 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 NR4A3Q92570 626 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 YIPF5Q969M3 257 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 ALG8Q9BVK2 526 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 MS4A8Q9BY19 250 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 RBCK1Q9BYM8 510 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 GSX2Q9BZM3 304 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 QRSL1Q9H0R6 528 aaKnown RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 CDCP1Q9H5V8 836 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 MRPL17Q9NRX2 175 aaKnown RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 SEMA4GQ9NTN9 838 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 TEX10Q9NXF1 929 aaPredicted RBP13.3□□□□□ -0.28
SRP54-202ENST00000546080 SPG21Q9NZD8 308 aa13.3□□□□□ -0.28
SRP54-202ENST00000546080 WASH3PC4AMC7 463 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 FRS3O43559 492 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 TOXO94900 526 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 HOXD4P09016 255 aaPredicted RBP13.29□□□□□ -0.28
SRP54-202ENST00000546080 GPR4P46093 362 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 RAG2P55895 527 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 ST3GAL3Q11203 375 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 GNA13Q14344 377 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 ZNF658BQ4V348 819 aaPredicted RBP13.29□□□□□ -0.28
SRP54-202ENST00000546080 FAM27D1Q5T7N8 215 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 PIP5KL1Q5T9C9 394 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 LCTLQ6UWM7 567 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 BTN2A1Q7KYR7 527 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 ZNF687Q8N1G0 1237 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 FTMTQ8N4E7 242 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 ACBD7Q8N6N7 88 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 OR2T35Q8NGX2 323 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 C12orf66Q96MD2 445 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 TBX5Q99593 518 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 GLIPR2Q9H4G4 154 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 IL21Q9HBE4 155 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 TRIM36Q9NQ86 728 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 HINT3Q9NQE9 182 aaKnown RBP13.29□□□□□ -0.28
SRP54-202ENST00000546080 KLHL1Q9NR64 748 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 PLAGL1Q9UM63 463 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 CLEC4AQ9UMR7 237 aa13.29□□□□□ -0.28
SRP54-202ENST00000546080 PPIEQ9UNP9 301 aaKnown RBP13.29□□□□□ -0.28
SRP54-202ENST00000546080 TMPRSS11DO60235 418 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 ELFN1P0C7U0 828 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 TIMP2P16035 220 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 UGT2B7P16662 529 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 FPR3P25089 353 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 ANXA11P50995 505 aaKnown RBP13.28□□□□□ -0.28
SRP54-202ENST00000546080 PITPNAQ00169 270 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 FUT5Q11128 374 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 MLC1Q15049 377 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 ZSWIM7Q19AV6 140 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 ARSIQ5FYB1 569 aa13.28□□□□□ -0.28
SRP54-202ENST00000546080 ARL9Q6T311 187 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms