RNA–Protein interactions for RNA: ENST00000544909.5

PAAF1-215, Transcript of proteasomal ATPase associated factor 1, human

TSL 1 (best) BASIC

Gene PAAF1, Length 1,802 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAAF1-215	ENST00000544909	TBC1D29	Q9UFV1	150 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	NCKAP1	Q9Y2A7	1128 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	COL4A2	P08572	1712 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	ATG2A	Q2TAZ0	1938 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	HTR3E	A5X5Y0	456 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	RGS13	O14921	159 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	STX11	O75558	287 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	RCBTB2	O95199	551 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	RNF144A	P50876	292 aa	Predicted RBP	11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	PDX1	P52945	283 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	HNRNPA0	Q13151	305 aa	Known RBP	11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	KCNJ8	Q15842	424 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	FHL5	Q5TD97	284 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	MZT2A	Q6P582	158 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	OR8H2	Q8N162	312 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	SLC16A11	Q8NCK7	471 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	OR7G2	Q8NG99	324 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	OR52L1	Q8NGH7	329 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	SLC2A12	Q8TD20	617 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	DNAJA4	Q8WW22	397 aa	Predicted RBP	11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	KCTD12	Q96CX2	325 aa	Known RBP	11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	FAM46A	Q96IP4	442 aa	Known RBP	11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	HS6ST2	Q96MM7	605 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	SOST	Q9BQB4	213 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	YIPF4	Q9BSR8	244 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	OR2B2	Q9GZK3	357 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	POT1	Q9NUX5	634 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	ERVK13-1	Q9NX77	482 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	PILRA	Q9UKJ1	303 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	KCNE3	Q9Y6H6	103 aa		11.63	□□□□□ -0.55
PAAF1-215	ENST00000544909	MDC1	Q14676	2089 aa	Known RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TBC1D3D	A0A087WVF3	549 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TBC1D3I	A0A087WXS9	549 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TBC1D3E	A0A087X179	549 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	FABP12	A6NFH5	140 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	CPSF4L	A6NMK7	179 aa	Known RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TBC1D3L	B9A6J9	549 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909		J3QRE1	110 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	PLD2	O14939	933 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	POLR1C	O15160	346 aa	Predicted RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZIC2	O95409	532 aa	Predicted RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	KRT8	P05787	483 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TBC1D3H	P0C7X1	549 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZNF888	P0CJ79	500 aa	Predicted RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	LAMP2	P13473	410 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	HOXB3	P14651	431 aa	Predicted RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TRHR	P34981	398 aa	Predicted RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	DDOST	P39656	456 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	MAP3K8	P41279	467 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	DGKE	P52429	567 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZNF136	P52737	540 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	OR2B6	P58173	313 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TAS2R43	P59537	309 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	GAS6	Q14393	721 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	CRTC2	Q53ET0	693 aa	Predicted RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TMEM196	Q5HYL7	178 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	PDZK1	Q5T2W1	519 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	C22orf42	Q6IC83	251 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TBC1D3C	Q6IPX1	549 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZNF613	Q6PF04	617 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	FAM111B	Q6SJ93	734 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	PAQR6	Q6TCH4	344 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TMPRSS11F	Q6ZWK6	438 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	NRM	Q8IXM6	262 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	GPALPP1	Q8IXQ4	340 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	TBC1D3	Q8IZP1	549 aa	Predicted RBP	11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	LNX2	Q8N448	690 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	OIT3	Q8WWZ8	545 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	C1GALT1C1	Q96EU7	318 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	SDF2	Q99470	211 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZFYVE21	Q9BQ24	234 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZNF649	Q9BS31	505 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	PLA2G2F	Q9BZM2	168 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	HOXD1	Q9GZZ0	328 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	ACTR10	Q9NZ32	417 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	CNIH4	Q9P003	139 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	CBLC	Q9ULV8	474 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909	PCDHGB7	Q9Y5F8	929 aa		11.62	□□□□□ -0.55
PAAF1-215	ENST00000544909		A0A1W2PQL4	384 aa	Predicted RBP	11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	BLACE	A4D250	179 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	SLC22A31	A6NKX4	558 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	OR5K4	A6NMS3	321 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	LAT	O43561	262 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	C8orf89	P0DMQ9	161 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	GNS	P15586	552 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	PAICS	P22234	425 aa	Known RBP	11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	HNRNPA2B1	P22626	353 aa	Known RBP	11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	WAS	P42768	502 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	GCGR	P47871	477 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	AVPR1B	P47901	424 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	HTRA3	P83110	453 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	CD300C	Q08708	224 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZNF750	Q32MQ0	723 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	ANKRD54	Q6NXT1	300 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	FBXO42	Q6P3S6	717 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	FAM131A	Q6UXB0	335 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	ZNF836	Q6ZNA1	936 aa		11.61	□□□□□ -0.55
PAAF1-215	ENST00000544909	RNF44	Q7L0R7	432 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms