RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ZNF468Q5VIY5 522 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 TNFAIP8L2Q6P589 184 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 BNC2Q6ZN30 1099 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 C16orf47Q6ZP98 133 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 LRRC74BQ6ZQY2 392 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 SERPINA11Q86U17 422 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 RETREG3Q86VR2 466 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 PIK3R3Q92569 461 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 HGDQ93099 445 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 SIGLEC12Q96PQ1 595 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 SDF2Q99470 211 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 ECSITQ9BQ95 431 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 TBL1XR1Q9BZK7 514 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 TMEM38AQ9H6F2 299 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 MTHFD2LQ9H903 347 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 ANKRD10Q9NXR5 420 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 KLRF1Q9NZS2 232 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 CNTRLQ7Z7A1 2325 aa16.09■□□□□ 0.17
CLSTN3-210ENST00000540931 PTPN13Q12923 2485 aa16.08■□□□□ 0.17
CLSTN3-210ENST00000540931 A0A0G2JPF8 293 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 PRAMEF25A6NGN4 478 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 HNRNPCL2B2RXH8 293 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 HNRNPCL3B7ZW38 293 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 C5orf58C9J3I9 102 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 PEX1O43933 1283 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 HNRNPCL1O60812 293 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 UGT2B11O75310 529 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 UNC5CO95185 931 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 HNRNPCL4P0DMR1 293 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 ESRRAP11474 423 aaPredicted RBP16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 CALB2P22676 271 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 CASP3P42574 277 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 ATP12AP54707 1039 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 FBXW4P57775 412 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 KCNJ2P63252 427 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 SPATS1Q496A3 300 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 INTS11Q5TA45 600 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 ERICH5Q6P6B1 374 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 FAM180AQ6UWF9 173 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 TRPM8Q7Z2W7 1104 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 BHLHE22Q8NFJ8 381 aaPredicted RBP16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 TNIP2Q8NFZ5 429 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 OR10G3Q8NGC4 313 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 OR5D16Q8NGK9 328 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 EFHD2Q96C19 240 aaPredicted RBP16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 RCN3Q96D15 328 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 TMEM41AQ96HV5 264 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 NSL1Q96IY1 281 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 DOHHQ9BU89 302 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 SPATA5L1Q9BVQ7 753 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 OSBPL11Q9BXB4 747 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 ZNF350Q9GZX5 532 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 SAP130Q9H0E3 1048 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 A4GALTQ9NPC4 353 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 QPCTLQ9NXS2 382 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 SLC25A37Q9NYZ2 338 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 SUCOQ9UBS9 1254 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 L3MBTL1Q9Y468 752 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 WDR45Q9Y484 360 aa16.08■□□□□ 0.16
CLSTN3-210ENST00000540931 AIM2O14862 343 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 ZNF354AO60765 605 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 SLC6A2P23975 617 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 MSX1P28360 303 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 EVI2BP34910 448 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 MVDP53602 400 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 C17orf67Q0P5P2 114 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 PLEKHN1Q494U1 663 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 FLYWCH1Q4VC44 716 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 GPAT3Q53EU6 434 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 GCNT6Q5T4J0 391 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 NANOGP8Q6NSW7 305 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 C16orf89Q6UX73 402 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 GALNTL5Q7Z4T8 443 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 SLC22A16Q86VW1 577 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 KRT73Q86Y46 540 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 TREML1Q86YW5 311 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 CMIPQ8IY22 773 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 PRR22Q8IZ63 422 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 FITM2Q8N6M3 262 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 ZFP62Q8NB50 900 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 C11orf65Q8NCR3 313 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 CATSPER1Q8NEC5 780 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 OR4N2Q8NGD1 307 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 FBXO30Q8TB52 745 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 ZNF597Q96LX8 424 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 FRMD6Q96NE9 622 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 CPPED1Q9BRF8 314 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 EVA1AQ9H8M9 152 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 NANOGQ9H9S0 305 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 SLC6A13Q9NSD5 602 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 SLAMF8Q9P0V8 285 aa16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 CNOT11Q9UKZ1 510 aaKnown RBP16.07■□□□□ 0.16
CLSTN3-210ENST00000540931 GXYLT2A0PJZ3 443 aa16.06■□□□□ 0.16
CLSTN3-210ENST00000540931 ALG1L2C9J202 215 aa16.06■□□□□ 0.16
CLSTN3-210ENST00000540931 K7EM74 188 aa16.06■□□□□ 0.16
CLSTN3-210ENST00000540931 PDE9AO76083 593 aa16.06■□□□□ 0.16
CLSTN3-210ENST00000540931 UTS2O95399 124 aa16.06■□□□□ 0.16
CLSTN3-210ENST00000540931 CYP4B1P13584 511 aa16.06■□□□□ 0.16
CLSTN3-210ENST00000540931 RFX3P48380 749 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms