RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SLC7A5Q01650 507 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 ACSM2AQ08AH3 577 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 TMEM44Q2T9K0 475 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 UNC50Q53HI1 259 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 BEX5Q5H9J7 111 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 ZNF678Q5SXM1 525 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 ACSM2BQ68CK6 577 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 PLEKHM3Q6ZWE6 761 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 C1GALT1C1Q96EU7 318 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 APIPQ96GX9 242 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 RTN4RQ9BZR6 473 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 CDC42EP4Q9H3Q1 356 aaKnown RBP12.2□□□□□ -0.46
SS18-204ENST00000539244 ZNF701Q9NV72 531 aaPredicted RBP12.2□□□□□ -0.46
SS18-204ENST00000539244 TAS2R7Q9NYW3 318 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 SENP1Q9P0U3 644 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 PROCRQ9UNN8 238 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 C19orf53Q9UNZ5 99 aaPredicted RBP12.2□□□□□ -0.46
SS18-204ENST00000539244 AP4B1Q9Y6B7 739 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 RTTNQ86VV8 2226 aa12.2□□□□□ -0.46
SS18-204ENST00000539244 SERTM1A2A2V5 107 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 TRIM49D1C9J1S8 452 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 INAFM1C9JVW0 142 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 H3BML4 177 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 SEC14L5O43304 696 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 KLF4O43474 513 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 SUPT7LO94864 414 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 IL33O95760 270 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 THBDP07204 575 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 DDCP20711 480 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 IL11P20809 199 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 CASQ1P31415 396 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 PPP2R2BQ00005 443 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 ZNF155Q12901 538 aaPredicted RBP12.19□□□□□ -0.46
SS18-204ENST00000539244 DECR1Q16698 335 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 SH2D5Q6ZV89 423 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 GPRIN3Q6ZVF9 776 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 OR6K3Q8NGY3 331 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 SPATA3Q8NHX4 192 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 METTL6Q8TCB7 284 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 DCAKDQ8WVC6 231 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 GFM2Q969S9 779 aaKnown RBP12.19□□□□□ -0.46
SS18-204ENST00000539244 ZC3HAV1LQ96H79 300 aaKnown RBP12.19□□□□□ -0.46
SS18-204ENST00000539244 PLSCR4Q9NRQ2 329 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 FLRT3Q9NZU0 649 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 GRID1Q9ULK0 1009 aa12.19□□□□□ -0.46
SS18-204ENST00000539244 PRR14LQ5THK1 2151 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.18□□□□□ -0.46
SS18-204ENST00000539244 UPK1AO00322 258 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 AQP8O94778 261 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 IFI6P09912 130 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 HMOX2P30519 316 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 HTR6P50406 440 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 ETF1P62495 437 aaKnown RBP12.18□□□□□ -0.46
SS18-204ENST00000539244 ZNF763Q0D2J5 394 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 C17orf67Q0P5P2 114 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 C8orf74Q6P047 294 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 GGNQ86UU5 652 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 OR2L13Q8N349 312 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 OR5M1Q8NGP8 315 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.18□□□□□ -0.46
SS18-204ENST00000539244 DUSP19Q8WTR2 217 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 TMEM171Q8WVE6 324 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 GMPPAQ96IJ6 420 aaPredicted RBP12.18□□□□□ -0.46
SS18-204ENST00000539244 TMEM237Q96Q45 408 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 BBS4Q96RK4 519 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 LMF2Q9BU23 707 aaKnown RBP12.18□□□□□ -0.46
SS18-204ENST00000539244 KLHL4Q9C0H6 718 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 TSPYL1Q9H0U9 437 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 OR10A4Q9H209 315 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 Q9N2J8 555 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 DMGDHQ9UI17 866 aaKnown RBP12.18□□□□□ -0.46
SS18-204ENST00000539244 MRTO4Q9UKD2 239 aaKnown RBP12.18□□□□□ -0.46
SS18-204ENST00000539244 ADAM21Q9UKJ8 722 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 STK38LQ9Y2H1 464 aa12.18□□□□□ -0.46
SS18-204ENST00000539244 DLX3O60479 287 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 SS18L1O75177 396 aaPredicted RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 SOX30O94993 753 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 JUNP05412 331 aaKnown RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 ENO1P06733 434 aaKnown RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 ANXA4P09525 319 aaPredicted RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 ZNF17P17021 662 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 TAC1P20366 129 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 IMPDH1P20839 514 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 CLK3P49761 638 aaKnown RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 NCBP2P52298 156 aaKnown RBP eCLIP12.17□□□□□ -0.461e-8■■■□□ 16.9
SS18-204ENST00000539244 PSMD4P55036 377 aaKnown RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 NR1H2P55055 460 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 PKNOX1P55347 436 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 PRR5P85299 388 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 STX5Q13190 355 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 CAPRIN1Q14444 709 aaKnown RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.17□□□□□ -0.46
SS18-204ENST00000539244 PRSS53Q2L4Q9 553 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 SH2D4BQ5SQS7 431 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 ANKRD34AQ69YU3 496 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 FAM71E1Q6IPT2 247 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 TMEM107Q6UX40 140 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 STAC2Q6ZMT1 411 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 ZNF704Q6ZNC4 412 aaPredicted RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 TIFABQ6ZNK6 161 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms