RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 HTRA4P83105 476 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 FOXM1Q08050 763 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ILKQ13418 452 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 IKZF1Q13422 519 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 CAMK1Q14012 370 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SF1Q15637 639 aaKnown RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 SYTL3Q4VX76 610 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 KRBOX4Q5JUW0 171 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ADGRF1Q5T601 910 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 HECTD2Q5U5R9 776 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 GFI1BQ5VTD9 330 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 KIAA0319Q5VV43 1072 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 KANK2Q63ZY3 851 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SLC27A1Q6PCB7 646 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 DOK6Q6PKX4 331 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 C19orf48Q6RUI8 117 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 IL27RAQ6UWB1 636 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ZNF730Q6ZMV8 503 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 PTCHD4Q6ZW05 846 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 HSD17B13Q7Z5P4 300 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 FGD2Q7Z6J4 655 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 MAML2Q8IZL2 1156 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 LINC00528Q8N1L1 170 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 C11orf65Q8NCR3 313 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 TRPV1Q8NER1 839 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 OR5M1Q8NGP8 315 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 PHYHIPQ92561 330 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SLC22A18Q96BI1 424 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 C11orf24Q96F05 449 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 HRASLS5Q96KN8 279 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 INSM2Q96T92 566 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 ATF6BQ99941 703 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 PINK1Q9BXM7 581 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 POLDIP3Q9BY77 421 aaKnown RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 SIK2Q9H0K1 926 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ALX4Q9H161 411 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 PRDM13Q9H4Q3 707 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 AUNIPQ9H7T9 357 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 GORASP2Q9H8Y8 452 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 TEX10Q9NXF1 929 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 ZNF69Q9UC07 566 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SCP2D1Q9UJQ7 156 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 MOKQ9UQ07 419 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 DMRT1Q9Y5R6 373 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 AP1M2Q9Y6Q5 423 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 KIAA0100Q14667 2235 aaKnown RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 ARID1AO14497 2285 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 A0A1W2PPK0 400 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 A0A1W2PQ45 241 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 A0A1W2PQY0 241 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 C9orf170A2RU37 121 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 C7orf66A4D0T2 115 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 MARCH11A6NNE9 402 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 COLCA2A8K830 154 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ARHGEF33A8MVX0 844 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ZNF879B4DU55 563 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 UBE2CO00762 179 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SUV39H1O43463 412 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SH3BGRLO75368 114 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 RP2O75695 350 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SLC25A12O75746 678 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 LSM8O95777 96 aaKnown RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 AP2A1O95782 977 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 GLUD1P00367 558 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SCG5P05408 212 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 FABP3P05413 133 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ODC1P11926 461 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ADRB3P13945 408 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 MTHFD2P13995 350 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ZNF14P17017 642 aaPredicted RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 CTPS1P17812 591 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ITPKAP23677 461 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 NOVP48745 357 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 BEX3Q00994 111 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SLC10A7Q0GE19 358 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 STX4Q12846 297 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 COTL1Q14019 142 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SLBPQ14493 270 aaKnown RBP eCLIP3.5□□□□□ -1.85
MCF2-210ENST00000536274 NCF4Q15080 339 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 PTGES3Q15185 160 aaKnown RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 MICBQ29980 383 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 FNDC3BQ53EP0 1204 aaKnown RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 ARHGAP15Q53QZ3 475 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 TMEM240Q5SV17 173 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 HEPHL1Q6MZM0 1159 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ADAM5Q6NVV9 412 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 PGBD2Q6P3X8 592 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 ZNF367Q7RTV3 350 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 SLC9B2Q86UD5 537 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 NKAIN4Q8IVV8 208 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 FAM219AQ8IW50 185 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 CFAP206Q8IYR0 622 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 NPWQ8N729 165 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 CPEB3Q8NE35 698 aaKnown RBP3.5□□□□□ -1.85
MCF2-210ENST00000536274 GMCL1P1Q8NEA9 526 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 OR51S1Q8NGJ8 323 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 OR6B3Q8NGW1 331 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 DUSP19Q8WTR2 217 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 CHURC1Q8WUH1 139 aa3.5□□□□□ -1.85
MCF2-210ENST00000536274 PIH1D2Q8WWB5 315 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms