RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SMIM23A6NLE4 172 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 COPEO14579 308 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 PDPK1O15530 556 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 HCRTR2O43614 444 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 GMFGO60234 142 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 FADS1O60427 444 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 TNFSF13O75888 250 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 CHEK2O96017 543 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 PROCP04070 461 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 HRGP04196 525 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 FOSL1P15407 271 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 PRKAG1P54619 331 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 B3GALT5-AS1P59052 145 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 DNAJB13P59910 316 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 SIRPAP78324 504 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 ADAM8P78325 824 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 C17orf67Q0P5P2 114 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 HSPB3Q12988 150 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 FGFBP1Q14512 234 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 SGCBQ16585 318 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 MARCH3Q86UD3 253 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 OR5M1Q8NGP8 315 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 ZFP28Q8NHY6 868 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 RNF138Q8WVD3 245 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 GFM2Q969S9 779 aaKnown RBP13.31□□□□□ -0.28
VPS28-215ENST00000531924 ZNF845Q96IR2 970 aaPredicted RBP13.31□□□□□ -0.28
VPS28-215ENST00000531924 METTL2AQ96IZ6 378 aaKnown RBP13.31□□□□□ -0.28
VPS28-215ENST00000531924 MED18Q9BUE0 208 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 PINK1Q9BXM7 581 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 PRRG4Q9BZD6 226 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 LRTM1Q9HBL6 345 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 HHATLQ9HCP6 504 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 EMCNQ9ULC0 261 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 ZNF337Q9Y3M9 751 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 PRRC2AP48634 2157 aaKnown RBP13.31□□□□□ -0.28
VPS28-215ENST00000531924 C17orf51A8MQB3 221 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 TNFRSF21O75509 655 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 UTS2O95399 124 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 PRPS2P11908 318 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 CRHR1P34998 444 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 FAM27E3Q08E93 113 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 PRSS53Q2L4Q9 553 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 GLYR1Q49A26 553 aaPredicted RBP13.3□□□□□ -0.28
VPS28-215ENST00000531924 CEP70Q8NHQ1 597 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS28-215ENST00000531924 MZB1Q8WU39 189 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 PPCDCQ96CD2 204 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 STARD4Q96DR4 205 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 C1GALT1C1Q96EU7 318 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 LMF2Q9BU23 707 aaKnown RBP13.3□□□□□ -0.28
VPS28-215ENST00000531924 PPCSQ9HAB8 311 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 BEX4Q9NWD9 120 aaPredicted RBP13.3□□□□□ -0.28
VPS28-215ENST00000531924 OXSMQ9NWU1 459 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 C1orf109Q9NX04 203 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 KLHL28Q9NXS3 571 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 FLRT3Q9NZU0 649 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 MID2Q9UJV3 735 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 FIS1Q9Y3D6 152 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 ZNF175Q9Y473 711 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 TESMINQ9Y4I5 508 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 AP4B1Q9Y6B7 739 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 ABCA4P78363 2273 aa13.3□□□□□ -0.28
VPS28-215ENST00000531924 KIAA1549Q9HCM3 1950 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 HRNRQ86YZ3 2850 aaPredicted RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 OR2M5A3KFT3 312 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 ARHGEF9O43307 516 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 AKAP10O43572 662 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 PLIN3O60664 434 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 ANGPTL1O95841 491 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 PLGP00747 810 aaPredicted RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 FCGR2AP12318 317 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 POU2F1P14859 743 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 HPGDP15428 266 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 DDX5P17844 614 aaKnown RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 CD79BP40259 229 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 MANFP55145 182 aaKnown RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 PON3Q15166 354 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 LIPMQ5VYY2 423 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 CLEC6AQ6EIG7 209 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 ANKRD26P1Q6NSI1 321 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 VWA1Q6PCB0 445 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 ZNF551Q7Z340 670 aaPredicted RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 BTLAQ7Z6A9 289 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 GSPT2Q8IYD1 628 aaKnown RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 FNDC9Q8TBE3 224 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 FIG4Q92562 907 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 PIK3R3Q92569 461 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 SLC9A6Q92581 669 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 ZBED6CLQ96FA7 236 aaPredicted RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 TXLNGYQ9BZA5 131 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 OPN3Q9H1Y3 402 aaPredicted RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 ELOVL5Q9NYP7 299 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 C6orf203Q9P0P8 240 aaPredicted RBP13.29□□□□□ -0.28
VPS28-215ENST00000531924 SH3BP4Q9P0V3 963 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 PROCRQ9UNN8 238 aa13.29□□□□□ -0.28
VPS28-215ENST00000531924 GXYLT2A0PJZ3 443 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 H0YC42 278 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 C16orf97H3BN30 126 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 AZIN1O14977 448 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 EMC8O43402 210 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms