RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RHDQ02161 417 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 LIPEQ05469 1076 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 TRAP1Q12931 704 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 VEZF1Q14119 521 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 TRIM25Q14258 630 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 GNA13Q14344 377 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 FXNQ16595 210 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 GTDC1Q4AE62 458 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 RABL3Q5HYI8 236 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 PLAG1Q6DJT9 500 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 FAAH2Q6GMR7 532 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 MFSD12Q6NUT3 480 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 CDC73Q6P1J9 531 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 ERICH5Q6P6B1 374 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 RNF111Q6ZNA4 994 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 LANCL3Q6ZV70 420 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 RNF130Q86XS8 419 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 PTRH1Q86Y79 214 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 RAB43Q86YS6 212 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SLC30A8Q8IWU4 369 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 C10orf67Q8IYJ2 551 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 LGI4Q8N135 537 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 CELF2-AS1Q8N7Q2 184 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 APCDD1LQ8NCL9 501 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 OR11G2Q8NGC1 345 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 OR52R1Q8NGF1 315 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 OR10A6Q8NH74 314 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 OR5AK3PQ8NH89 298 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 ELP5Q8TE02 316 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 ADAMTS17Q8TE56 1095 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SNRNP27Q8WVK2 155 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 THAP4Q8WY91 577 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 POP5Q969H6 163 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 MCUR1Q96AQ8 359 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 RNF31Q96EP0 1072 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SLC35A4Q96G79 324 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 VMP1Q96GC9 406 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 AURKBQ96GD4 344 aaPredicted RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 REXO5Q96IC2 774 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 MAGED4Q96JG8 741 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 VSTM2LQ96N03 204 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 BBC3Q96PG8 261 aaPredicted RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 CCNL2Q96S94 520 aaPredicted RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 CPPED1Q9BRF8 314 aaPredicted RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 SLC39A3Q9BRY0 314 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 LMF2Q9BU23 707 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 NUDT9Q9BW91 350 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 OR8D2Q9GZM6 311 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 GP6Q9HCN6 339 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 MMP25Q9NPA2 562 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 DUSP22Q9NRW4 184 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 EXD2Q9NVH0 621 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 GFOD1Q9NXC2 390 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 PRR13Q9NZ81 148 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 ERVK-19Q9WJR5 959 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 GPR55Q9Y2T6 319 aaPredicted RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 HEMK1Q9Y5R4 338 aaPredicted RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 HS3ST3B1Q9Y662 390 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.85□□□□□ -1.31
CD44-228ENST00000528455 AHCTF1Q8WYP5 2266 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 NSG1A0A0A6YYJ2 146 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 C2orf92A0A1B0GVN3 265 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 TMEM247A6NEH6 219 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 ERICH4A6NGS2 130 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 K7ENP7 123 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 HRKO00198 91 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 HMGN4O00479 90 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 GMNNO75496 209 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 AK1P00568 194 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 HPP00738 406 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 CLPSP04118 112 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 ALOX5P09917 674 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 COX6A1P12074 109 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 LIFP15018 202 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 NAGAP17050 411 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 SOAT1P35610 550 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 GSK3BP49841 420 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 PGDP52209 483 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 MTPNP58546 118 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 PSG6Q00889 435 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 IKZF1Q13422 519 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 GAB1Q13480 694 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 CEACAM7Q14002 265 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 SELPLGQ14242 412 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 LASP1Q14847 261 aaKnown RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 EXOSC7Q15024 291 aaKnown RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 PCOLCEQ15113 449 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 TGIF1Q15583 401 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 ZNHIT3Q15649 155 aaPredicted RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 ADRM1Q16186 407 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 ZNF630Q2M218 657 aaPredicted RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 ARHGAP11BQ3KRB8 267 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.84□□□□□ -1.31
CD44-228ENST00000528455 ATAD3BQ5T9A4 648 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 PRAMEF8Q5VWM4 474 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 PRAMEF7Q5VXH5 474 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 HEPHL1Q6MZM0 1159 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 H3F3CQ6NXT2 135 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 INO80CQ6PI98 192 aaPredicted RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 PAPD4Q6PIY7 484 aaKnown RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms