RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 C1orf94Q6P1W5 598 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 GUSBP11Q6P575 273 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 TMEM71Q6P5X7 295 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 TMPRSS9Q7Z410 1059 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZAR1Q86SH2 424 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 GTF2IRD2Q86UP8 949 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 CCDC103Q8IW40 242 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZNF501Q96CX3 271 aaPredicted RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZC3H10Q96K80 434 aaKnown RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 OR1F2PQ96R84 312 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ANKRD19PQ9H560 264 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 FBXO4Q9UKT5 387 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 PCDHGB1Q9Y5G3 927 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 A0A087WUU8 490 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 TOX3O15405 576 aaPredicted RBP19.22■□□□□ 0.67
VPS28-209ENST00000528142 TP53P04637 393 aaPredicted RBP19.22■□□□□ 0.67
VPS28-209ENST00000528142 SPTBP11277 2137 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 MMP11P24347 488 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 AVPR2P30518 371 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 ST3GAL3Q11203 375 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 TRAM2Q15035 370 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 PERM1Q5SV97 790 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 TMEM236Q5W0B7 351 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 ZNF574Q6ZN55 896 aaPredicted RBP19.22■□□□□ 0.67
VPS28-209ENST00000528142 FAM181AQ8N9Y4 354 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 OR13F1Q8NGS4 319 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 CNDP2Q96KP4 475 aaKnown RBP19.22■□□□□ 0.67
VPS28-209ENST00000528142 MCHR1Q99705 422 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 PELOQ9BRX2 385 aaKnown RBP19.22■□□□□ 0.67
VPS28-209ENST00000528142 RHNO1Q9BSD3 238 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 POLR2J3Q9H1A7 115 aaKnown RBP19.22■□□□□ 0.67
VPS28-209ENST00000528142 VCX3AQ9NNX9 186 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 PLCXD1Q9NUJ7 323 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 SERTAD3Q9UJW9 196 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 GMEB2Q9UKD1 530 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 SLC6A14Q9UN76 642 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 DTX4Q9Y2E6 619 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 NTNG1Q9Y2I2 539 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 MMACHCQ9Y4U1 282 aa19.22■□□□□ 0.67
VPS28-209ENST00000528142 NPIPA5A0A0B4J1W7 369 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 NPIPA7E9PJI5 369 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 AP3D1O14617 1153 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 THY1P04216 161 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 NPIPA8P0DM63 369 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 COX10Q12887 443 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 ZNHIT3Q15649 155 aaPredicted RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 ZC3H14Q6PJT7 736 aaKnown RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 BMP8AQ7Z5Y6 402 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 GPR135Q8IZ08 494 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 SLC38A4Q969I6 547 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 GPA33Q99795 319 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 NDC1Q9BTX1 674 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 NDOR1Q9UHB4 597 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CDC14AQ9UNH5 594 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 ERVK-19Q9WJR5 959 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 SNX5Q9Y5X3 404 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 ARID1BQ8NFD5 2236 aaPredicted RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 DMDP11532 3685 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 NINQ8N4C6 2090 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CACNA1EQ15878 2313 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CPED1A4D0V7 1026 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CDHR4A6H8M9 788 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 MRPS14O60783 128 aaKnown RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 PRAMEF2O60811 474 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 FAM20BO75063 409 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 SEC14L2O76054 403 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 OR5F1O95221 314 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CLPSP04118 112 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 IGFBP1P08833 259 aaPredicted RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 ALDH6A1Q02252 535 aaKnown RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 DSG2Q14126 1118 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 MRPL2Q5T653 305 aaKnown RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 NPSR1Q6W5P4 371 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CLVS1Q8IUQ0 354 aaPredicted RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 ZNF615Q8N8J6 731 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 ZNF540Q8NDQ6 660 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 OR4N2Q8NGD1 307 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 SIGLEC11Q96RL6 698 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CNPPD1Q9BV87 410 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 GAREM1Q9H706 876 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 CAPN10Q9HC96 672 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 C11orf16Q9NQ32 467 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 FGF21Q9NSA1 209 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 PTTG2Q9NZH5 202 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 ATXN7L1Q9ULK2 861 aaPredicted RBP19.21■□□□□ 0.67
VPS28-209ENST00000528142 PCDHGA10Q9Y5H3 936 aa19.21■□□□□ 0.67
VPS28-209ENST00000528142 IGKV3D-11A0A0A0MRZ8 115 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 ZNF701M0R085 212 aaPredicted RBP19.2■□□□□ 0.66
VPS28-209ENST00000528142 DSCR3O14972 297 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 YKT6O15498 198 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 IGKV1D-16P01601 117 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 IFNA16P05015 189 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 CFIP05156 583 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 SP9P0CG40 484 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 ITIH1P19827 911 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 POU1F1P28069 291 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 SLC5A2P31639 672 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 CNR2P34972 360 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 CDC42P60953 191 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 YOD1Q5VVQ6 348 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms