RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 DEFB127Q9H1M4 99 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 CXorf36Q9H7Y0 433 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 RMND5AQ9H871 391 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 NPDC1Q9NQX5 325 aaPredicted RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 SACM1LQ9NTJ5 587 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 TMEM45AQ9NWC5 275 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 BTNL2Q9UIR0 455 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 MRTO4Q9UKD2 239 aaKnown RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 HRH3Q9Y5N1 445 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 ZNF407Q9C0G0 2248 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 MTORP42345 2549 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 A0A0G2JMM0 328 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 RNF103-CHMP3A0A140T963 221 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 A0A1W2PPB8 328 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 A0A1W2PRS3 328 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 FIGNL2A6NMB9 653 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 KIR3DP1A8MWS1 328 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 NPIPA2E9PIF3 369 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 NPIPA3F8WFD2 350 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 G3V3Y1 287 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 RRP9O43818 475 aaKnown RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 SCN2BO60939 215 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 ABCB7O75027 752 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 NME6O75414 186 aaPredicted RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 FAM107AO95990 144 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 ALOX5P09917 674 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 CT45A8P0DMV1 189 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 CT45A9P0DMV2 189 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 IGFBP2P18065 325 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 NCF2P19878 526 aaPredicted RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 MSX1P28360 303 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 IL12BP29460 328 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 PSMD4P55036 377 aaKnown RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 PPIAP62937 165 aaKnown RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 PHC1P78364 1004 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 PSG6Q00889 435 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 EFR3AQ14156 821 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 LASP1Q14847 261 aaKnown RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 CYP27C1Q4G0S4 372 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 TIGD2Q4W5G0 525 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 CT45A2Q5DJT8 189 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 EMC4Q5J8M3 183 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 TBCELQ5QJ74 424 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 SLC22A10Q63ZE4 541 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 CGB2Q6NT52 195 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 MFSD12Q6NUT3 480 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 NPSR1Q6W5P4 371 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 TMEM200AQ86VY9 491 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 FBXW8Q8N3Y1 598 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 TRIML2Q8N7C3 387 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 OR10G3Q8NGC4 313 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 SLC9A6Q92581 669 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 TMBIM1Q969X1 311 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 GIMAP5Q96F15 307 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 ITCHQ96J02 903 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 SLC35G5Q96KT7 338 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 PANX1Q96RD7 426 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 SECISBP2Q96T21 854 aaKnown RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 ACTRT3Q9BYD9 372 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 ZDHHC11Q9H8X9 412 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 KCNJ16Q9NPI9 418 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 CNIH4Q9P003 139 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 CBLCQ9ULV8 474 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 FAF1Q9UNN5 650 aaPredicted RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 INTS1Q8N201 2190 aaKnown RBP9.28□□□□□ -0.92
VPS28-204ENST00000526054 DNAJC13O75165 2243 aa9.28□□□□□ -0.92
VPS28-204ENST00000526054 NINQ8N4C6 2090 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 OR14I1A6ND48 311 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 CCDC154A6NI56 674 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 OR6C70A6NIJ9 312 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 NR5A2O00482 541 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 RFXANKO14593 260 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 BCKDKO14874 412 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 REM1O75628 298 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 TOXO94900 526 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 SOX30O94993 753 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 NKX2-2O95096 273 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 KCNH1O95259 989 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 HMGN2P05204 90 aaKnown RBP9.27□□□□□ -0.93
VPS28-204ENST00000526054 CCL3P10147 92 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 ACP2P11117 423 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 DRD4P21917 467 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 UQCRC2P22695 453 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 GABRA3P34903 492 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 CHI3L1P36222 383 aaPredicted RBP9.27□□□□□ -0.93
VPS28-204ENST00000526054 NUP107P57740 925 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 FBXW4P57775 412 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 TFF3Q07654 80 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 PMPCAQ10713 525 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 RCAN2Q14206 197 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 TESK1Q15569 626 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 DECR1Q16698 335 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 AGKQ53H12 422 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 CDC73Q6P1J9 531 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 SPNS3Q6ZMD2 512 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 NUP54Q7Z3B4 507 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 WDR53Q7Z5U6 358 aaPredicted RBP9.27□□□□□ -0.93
VPS28-204ENST00000526054 CCDC71Q8IV32 467 aaPredicted RBP9.27□□□□□ -0.93
VPS28-204ENST00000526054 FAM109AQ8N4B1 249 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms