RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 COX20Q5RI15 118 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.02■□□□□ 0.64
CD44-222ENST00000526025 FIGNL1Q6PIW4 674 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 C16orf62Q7Z3J2 963 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 PNPT1Q8TCS8 783 aaKnown RBP19.02■□□□□ 0.64
CD44-222ENST00000526025 BCAS4Q8TDM0 211 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 XAGE5Q8WWM1 108 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 PMM1Q92871 262 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 TMEM41AQ96HV5 264 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 CPPED1Q9BRF8 314 aaPredicted RBP19.02■□□□□ 0.64
CD44-222ENST00000526025 OSBPL11Q9BXB4 747 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 UBQLN4Q9NRR5 601 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 GID8Q9NWU2 228 aa19.02■□□□□ 0.64
CD44-222ENST00000526025 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.02■□□□□ 0.64
CD44-222ENST00000526025 SHANK1Q9Y566 2161 aa19.02■□□□□ 0.63
CD44-222ENST00000526025 FADS1O60427 444 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 TRIM3O75382 744 aaPredicted RBP19.01■□□□□ 0.63
CD44-222ENST00000526025 STX11O75558 287 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 UTS2O95399 124 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 TBXA2RP21731 343 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 PTGDSP41222 190 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 DSTNP60981 165 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 FOXO1Q12778 655 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 FAM180AQ6UWF9 173 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.01■□□□□ 0.63
CD44-222ENST00000526025 GRHL3Q8TE85 626 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 RAB8BQ92930 207 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 ROPN1LQ96C74 230 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 TRNT1Q96Q11 434 aaKnown RBP19.01■□□□□ 0.63
CD44-222ENST00000526025 TAAR6Q96RI8 345 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 DOHHQ9BU89 302 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 IL1RL2Q9HB29 575 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 KLRF1Q9NZS2 232 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 LUZP4Q9P127 313 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 P2RX2Q9UBL9 471 aa19.01■□□□□ 0.63
CD44-222ENST00000526025 BOKQ9UMX3 212 aaPredicted RBP19.01■□□□□ 0.63
CD44-222ENST00000526025 A0A0G2JMM0 328 aa19■□□□□ 0.63
CD44-222ENST00000526025 A0A1W2PPB8 328 aa19■□□□□ 0.63
CD44-222ENST00000526025 A0A1W2PQD3 144 aa19■□□□□ 0.63
CD44-222ENST00000526025 A0A1W2PRS3 328 aa19■□□□□ 0.63
CD44-222ENST00000526025 TTLL8A6PVC2 850 aa19■□□□□ 0.63
CD44-222ENST00000526025 KIR3DP1A8MWS1 328 aa19■□□□□ 0.63
CD44-222ENST00000526025 ALG1L2C9J202 215 aa19■□□□□ 0.63
CD44-222ENST00000526025 NPIPB9F8W1W9 429 aa19■□□□□ 0.63
CD44-222ENST00000526025 FXYD1O00168 92 aa19■□□□□ 0.63
CD44-222ENST00000526025 TNFRSF21O75509 655 aa19■□□□□ 0.63
CD44-222ENST00000526025 GLSO94925 669 aaPredicted RBP19■□□□□ 0.63
CD44-222ENST00000526025 CRATP43155 626 aa19■□□□□ 0.63
CD44-222ENST00000526025 RFX3P48380 749 aa19■□□□□ 0.63
CD44-222ENST00000526025 CLK3P49761 638 aaKnown RBP19■□□□□ 0.63
CD44-222ENST00000526025 CASP9P55211 416 aa19■□□□□ 0.63
CD44-222ENST00000526025 KCNJ2P63252 427 aa19■□□□□ 0.63
CD44-222ENST00000526025 FUT5Q11128 374 aa19■□□□□ 0.63
CD44-222ENST00000526025 INPP5JQ15735 1006 aaPredicted RBP19■□□□□ 0.63
CD44-222ENST00000526025 CCNJQ5T5M9 372 aa19■□□□□ 0.63
CD44-222ENST00000526025 PRAMEF20Q5VT98 475 aa19■□□□□ 0.63
CD44-222ENST00000526025 DESI1Q6ICB0 168 aa19■□□□□ 0.63
CD44-222ENST00000526025 HACD2Q6Y1H2 254 aa19■□□□□ 0.63
CD44-222ENST00000526025 BNC2Q6ZN30 1099 aaPredicted RBP19■□□□□ 0.63
CD44-222ENST00000526025 PACS2Q86VP3 889 aa19■□□□□ 0.63
CD44-222ENST00000526025 METTL25Q8N6Q8 603 aa19■□□□□ 0.63
CD44-222ENST00000526025 OR8J3Q8NGG0 315 aa19■□□□□ 0.63
CD44-222ENST00000526025 LRRC58Q96CX6 371 aa19■□□□□ 0.63
CD44-222ENST00000526025 SNRNP40Q96DI7 357 aaKnown RBP19■□□□□ 0.63
CD44-222ENST00000526025 ZNF597Q96LX8 424 aa19■□□□□ 0.63
CD44-222ENST00000526025 SH3GL1Q99961 368 aa19■□□□□ 0.63
CD44-222ENST00000526025 SAP130Q9H0E3 1048 aa19■□□□□ 0.63
CD44-222ENST00000526025 ZFP64Q9NPA5 681 aa19■□□□□ 0.63
CD44-222ENST00000526025 AGPAT4Q9NRZ5 378 aa19■□□□□ 0.63
CD44-222ENST00000526025 CALML5Q9NZT1 146 aa19■□□□□ 0.63
CD44-222ENST00000526025 WIF1Q9Y5W5 379 aa19■□□□□ 0.63
CD44-222ENST00000526025 SEC23IPQ9Y6Y8 1000 aaKnown RBP19■□□□□ 0.63
CD44-222ENST00000526025 SPENQ96T58 3664 aaKnown RBP19■□□□□ 0.63
CD44-222ENST00000526025 KIAA0513O60268 411 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 PRB1P04280 392 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 ETFAP13804 333 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 ELAVL4P26378 380 aaKnown RBP18.99■□□□□ 0.63
CD44-222ENST00000526025 DNASE1L1P49184 302 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 GAS1P54826 345 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 GPR85P60893 370 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 GNA13Q14344 377 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 GRAMD1BQ3KR37 738 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 PRAMEF8Q5VWM4 474 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 PRAMEF7Q5VXH5 474 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 ZNF324BQ6AW86 544 aaPredicted RBP18.99■□□□□ 0.63
CD44-222ENST00000526025 LRRC74BQ6ZQY2 392 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 ZAR1Q86SH2 424 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 POU5F2Q8N7G0 328 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 ZNF527Q8NB42 609 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 RCN3Q96D15 328 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 IKZF5Q9H5V7 419 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 EFCAB1Q9HAE3 211 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 A4GALTQ9NPC4 353 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 SDHAF3Q9NRP4 125 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 FBXO34Q9NWN3 711 aa18.99■□□□□ 0.63
CD44-222ENST00000526025 TUBA8Q9NY65 449 aaPredicted RBP18.99■□□□□ 0.63
CD44-222ENST00000526025 C15orf38-AP3S2A0A0A6YYH1 394 aa18.98■□□□□ 0.63
CD44-222ENST00000526025 PRAMEF27A3QJZ7 478 aa18.98■□□□□ 0.63
CD44-222ENST00000526025 PINLYPA6NC86 204 aa18.98■□□□□ 0.63
CD44-222ENST00000526025 TMEM247A6NEH6 219 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms