RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CA3P07451 260 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 PLEKP08567 350 aaPredicted RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 SMIM18P0DKX4 95 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 HAPLN1P10915 354 aaPredicted RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 CPA3P15088 417 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 LCN1P31025 176 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MAP2K2P36507 400 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 FDFT1P37268 417 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 NAMPTP43490 491 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 NUMBP49757 651 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 RGS19P49795 217 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 RAB9AP51151 201 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 BCAP31P51572 246 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 CCR4P51679 360 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MTCP1P56278 107 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 CLDN15P56746 228 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 NANOS2P60321 138 aaKnown RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 TSPAN5P62079 268 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 CX3CL1P78423 397 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 ZXDBP98169 803 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 KEAP1Q14145 624 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 GPR176Q14439 515 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 NPTX1Q15818 432 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 CA9Q16790 459 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 HKDC1Q2TB90 917 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 CCDC14Q49A88 953 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 ELFN2Q5R3F8 820 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 LCN1P1Q5VSP4 162 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 AGAP6Q5VW22 663 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 RAET1LQ5VY80 246 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 C9orf57Q5W0N0 161 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 ZSCAN25Q6NSZ9 544 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 C11orf63Q6NUN7 778 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 TRIM65Q6PJ69 517 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 USP50Q70EL3 339 aaPredicted RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 VPS36Q86VN1 386 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 LRRC6Q86X45 466 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MEX3DQ86XN8 651 aaKnown RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 ITPRIPQ8IWB1 547 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 THAP8Q8NA92 274 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 SIDT2Q8NBJ9 832 aaKnown RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 OR5D13Q8NGL4 314 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 ZNF596Q8TC21 504 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 LRRC20Q8TCA0 184 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 PNPT1Q8TCS8 783 aaKnown RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 GPX8Q8TED1 209 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 IRGQQ8WZA9 623 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 TNFRSF14Q92956 283 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 SCRN2Q96FV2 425 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 COQ2Q96H96 371 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MED30Q96HR3 178 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 LURAP1Q96LR2 239 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 IL17FQ96PD4 163 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 IDI2Q9BXS1 227 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 OLFML3Q9NRN5 406 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 GKN1Q9NS71 199 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MAN2C1Q9NTJ4 1040 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 MRPL22Q9NWU5 206 aaKnown RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 TBC1D24Q9ULP9 559 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 FOXJ3Q9UPW0 622 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 RNF24Q9Y225 148 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 NCKAP1Q9Y2A7 1128 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 OR10H1Q9Y4A9 318 aa4.27□□□□□ -1.73
CD44-220ENST00000525688 ZNF646O15015 1829 aaPredicted RBP4.27□□□□□ -1.73
CD44-220ENST00000525688 PSME4Q14997 1843 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 IGLV5-45A0A087WSX0 123 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 NR5A2O00482 541 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 PDXKO00764 312 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ARPC3O15145 178 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ACSL4O60488 711 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 BCAS1O75363 584 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 UPK3AO75631 287 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 PROS1P07225 676 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 PRDX2P32119 198 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 HSD17B3P37058 310 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 PTGFRP43088 359 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 GYG1P46976 350 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 OR3A1P47881 315 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 HOXA1P49639 335 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 SLC26A2P50443 739 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 CCNG1P51959 295 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 C21orf59P57076 290 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 FKBP1AP62942 108 aaKnown RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 MBTD1Q05BQ5 628 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 KDSRQ06136 332 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ILF3Q12906 894 aaKnown RBP eCLIP4.26□□□□□ -1.73
CD44-220ENST00000525688 UGT3A2Q3SY77 523 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 BEX5Q5H9J7 111 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 C20orf194Q5TEA3 1177 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 IL23RQ5VWK5 629 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 NADSYN1Q6IA69 706 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 NIPAL3Q6P499 406 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 BLOC1S2Q6QNY1 142 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 BTNL8Q6UX41 500 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 BHLHA15Q7RTS1 189 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 C16orf62Q7Z3J2 963 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ARHGAP22Q7Z5H3 698 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 CDKL3Q8IVW4 592 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 CCDC36Q8IYA8 594 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ZNF683Q8IZ20 524 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms