RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	MPI	P34949	423 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	CLK3	P49761	638 aa	Known RBP	14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	CTBP2	P56545	445 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	GUCY2D	Q02846	1103 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	ZNF155	Q12901	538 aa	Predicted RBP	14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	CYP27C1	Q4G0S4	372 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	FAM9C	Q8IZT9	166 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	OR7G2	Q8NG99	324 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	DUSP19	Q8WTR2	217 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	AKAP1	Q92667	903 aa	Known RBP eCLIP	14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	TRMT61A	Q96FX7	289 aa	Known RBP	14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	GMPPA	Q96IJ6	420 aa	Predicted RBP	14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	REG4	Q9BYZ8	158 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	ACTR6	Q9GZN1	396 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	FAM120C	Q9NX05	1096 aa	Known RBP	14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	FLRT3	Q9NZU0	649 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	STOML1	Q9UBI4	398 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	CR1	P17927	2039 aa		14.12	□□□□□ -0.15
LMNA-223	ENST00000515459	GNG14	A0A1W2PPG7	69 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	PCDH7	O60245	1069 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	SS18L1	O75177	396 aa	Predicted RBP	14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	COQ9	O75208	318 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	HSD3B1	P14060	373 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	TSPAN8	P19075	237 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	HSD3B2	P26439	372 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	IDUA	P35475	653 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	EIF1AX	P47813	144 aa	Known RBP	14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	CDH13	P55290	713 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	HEPACAM	Q14CZ8	416 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	DECR1	Q16698	335 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	TSNAXIP1	Q2TAA8	658 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	ZDHHC24	Q6UX98	284 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	BEND4	Q6ZU67	534 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	GGN	Q86UU5	652 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	PHC2	Q8IXK0	858 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	SPATA4	Q8NEY3	305 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	ZNF483	Q8TF39	744 aa	Predicted RBP	14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	RTN4R	Q9BZR6	473 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	RAB17	Q9H0T7	212 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	OR10A4	Q9H209	315 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	SLC35C2	Q9NQQ7	365 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	CLEC4A	Q9UMR7	237 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	GPR52	Q9Y2T5	361 aa		14.11	□□□□□ -0.15
LMNA-223	ENST00000515459	EIF1AY	O14602	144 aa	Known RBP	14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	TLX2	O43763	284 aa	Predicted RBP	14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	OR4F21	O95013	312 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	KRT6A	P02538	564 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	KRT6B	P04259	564 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	SLC6A8	P48029	635 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	KRT6C	P48668	564 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	CSTF3	Q12996	717 aa	Known RBP	14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	TRADD	Q15628	312 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	TCHHL1	Q5QJ38	904 aa	Predicted RBP	14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	ADAM5	Q6NVV9	412 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	MARCH3	Q86UD3	253 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	STK32C	Q86UX6	486 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	HIPK1	Q86Z02	1210 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	BBS4	Q96RK4	519 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	SHCBP1L	Q9BZQ2	653 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	KCNF1	Q9H3M0	494 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	GLRX2	Q9NS18	164 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	PAQR5	Q9NXK6	330 aa	Predicted RBP	14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	ZNF225	Q9UK10	706 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	MRTO4	Q9UKD2	239 aa	Known RBP	14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	MCTS1	Q9ULC4	181 aa	Known RBP	14.1	□□□□□ -0.15
LMNA-223	ENST00000515459	NFU1	Q9UMS0	254 aa		14.1	□□□□□ -0.15
LMNA-223	ENST00000515459		A0A087WV62	115 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	OVOL3	O00110	214 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	MANBA	O00462	879 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	PSMB1	P20618	241 aa	Known RBP	14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	PHB	P35232	272 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	PSMD4	P55036	377 aa	Known RBP	14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	RAE1	P78406	368 aa	Known RBP	14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	C2orf54	Q08AI8	447 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	C17orf67	Q0P5P2	114 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	TMEM44	Q2T9K0	475 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	SPIN4	Q56A73	249 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	LGSN	Q5TDP6	509 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	FAM219B	Q5XKK7	198 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	CDYL2	Q8N8U2	506 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	OR10D3	Q8NH80	312 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	C16orf78	Q8WTQ4	265 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	TMEM158	Q8WZ71	300 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	FBXW5	Q969U6	566 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	MRPL57	Q9BQC6	102 aa	Known RBP	14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	TACO1	Q9BSH4	297 aa	Known RBP	14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	C1QTNF3	Q9BXJ4	246 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	TBL1XR1	Q9BZK7	514 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459		Q9N2J8	555 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	RNF115	Q9Y4L5	304 aa		14.09	□□□□□ -0.15
LMNA-223	ENST00000515459	ABCA1	O95477	2261 aa		14.08	□□□□□ -0.15
LMNA-223	ENST00000515459	IGLV3-32	A0A0A0MS00	114 aa		14.08	□□□□□ -0.16
LMNA-223	ENST00000515459		A8MT66	165 aa		14.08	□□□□□ -0.16
LMNA-223	ENST00000515459	SHISA8	B8ZZ34	492 aa		14.08	□□□□□ -0.16
LMNA-223	ENST00000515459	CD5L	O43866	347 aa		14.08	□□□□□ -0.16
LMNA-223	ENST00000515459	GMFG	O60234	142 aa		14.08	□□□□□ -0.16
LMNA-223	ENST00000515459	ULK1	O75385	1050 aa		14.08	□□□□□ -0.16
LMNA-223	ENST00000515459	SLITRK5	O94991	958 aa		14.08	□□□□□ -0.16
LMNA-223	ENST00000515459	SYNGR4	O95473	234 aa		14.08	□□□□□ -0.16

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms