RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DBIP07108 87 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 VIPR2P41587 438 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 HTR3AP46098 478 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 POU4F2Q12837 409 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TMEM69Q5SWH9 247 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 CST9Q5W186 159 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC22A10Q63ZE4 541 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 ZNF776Q68DI1 518 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 IL20RBQ6UXL0 311 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 PAQR7Q86WK9 346 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 MMP21Q8N119 569 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR7G1Q8NGA0 311 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR52E2Q8NGJ4 325 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR4K13Q8NH42 304 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR8K3Q8NH51 312 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 THEM6Q8WUY1 208 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 CCDC107Q8WV48 283 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC25A46Q96AG3 418 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 EID2BQ96D98 161 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OPALINQ96PE5 141 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 NT5DC2Q9H857 520 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 CERS4Q9HA82 394 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 C1GALT1Q9NS00 363 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 ZNFX1Q9P2E3 1918 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 WASHC1A8K0Z3 465 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 LRRTM2O43300 516 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CD3GP09693 182 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CSF2RAP15509 400 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 MMP11P24347 488 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ITGB7P26010 798 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 AK4P27144 223 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 MAPK3P27361 379 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 HOXA9P31269 272 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 B4GALNT1Q00973 533 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 MBTPS1Q14703 1052 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OCLNQ16625 522 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ENTPD8Q5MY95 495 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 FAM205BPQ63HN1 556 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 B3GLCTQ6Y288 498 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ZNF227Q86WZ6 799 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 FTMTQ8N4E7 242 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR10H5Q8NGA6 315 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR51L1Q8NGJ5 315 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR6T1Q8NGN1 323 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 COQ8AQ8NI60 647 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 PXYLP1Q8TE99 480 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 KXD1Q9BQD3 176 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 EXO5Q9H790 373 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CD93Q9NPY3 652 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CCL26Q9Y258 94 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 NUBP2Q9Y5Y2 271 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC5A10A0PJK1 596 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 GXYLT2A0PJZ3 443 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CSN2P05814 226 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CBLP22681 906 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 MLLT3P42568 568 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ACTA2P62736 377 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 TRA2BP62995 288 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ACTG2P63267 376 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 DEFA5Q01523 94 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CHRNEQ04844 493 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 FAPQ12884 760 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 EIF4EBP2Q13542 120 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 PUM1Q14671 1186 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 PRRT3Q5FWE3 981 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ARHGAP11AQ6P4F7 1023 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 LRRC28Q86X40 367 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR5H6Q8NGV6 325 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 HCAR2Q8TDS4 363 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 DPF3Q92784 378 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 TANKQ92844 425 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 PDXPQ96GD0 296 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR7D2Q96RA2 312 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 CNN2Q99439 309 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 MKRN2Q9H000 416 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR52D1Q9H346 318 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 TAAR2Q9P1P5 351 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 FBXL21Q9UKT6 434 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 KRT33AO76009 404 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 PPP1R3DO95685 299 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 GNALP38405 381 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 AMZ1Q400G9 498 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ACSM3Q53FZ2 586 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR2L5Q8NG80 312 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 TM9SF4Q92544 642 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 C16orf58Q96GQ5 468 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 MS4A8Q9BY19 250 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 TRIM2Q9C040 744 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC28A3Q9HAS3 691 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR52A4PA6NMU1 304 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 OR7A10O76100 309 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 KCNK2O95069 426 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 GKN3PP0CG01 181 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 HIST1H1TP22492 207 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 WNT3P56703 355 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ALG11Q2TAA5 492 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 TP53I3Q53FA7 332 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 SYT14P1Q58G82 188 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 HENMT1Q5T8I9 393 aaKnown RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms