RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 IGFBP1P08833 259 aaPredicted RBP11.19□□□□□ -0.62
NUP54-202ENST00000502850 OMPP47874 163 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 DGKEP52429 567 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 WNT4P56705 351 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 TYW3Q6IPR3 259 aaKnown RBP11.19□□□□□ -0.62
NUP54-202ENST00000502850 Q6ZSR6 202 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 TRIM73Q86UV7 250 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 RNF113BQ8IZP6 322 aaKnown RBP11.19□□□□□ -0.62
NUP54-202ENST00000502850 RPLP0P6Q8NHW5 317 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 EDAQ92838 391 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 COL26A1Q96A83 441 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 FAM122AQ96E09 287 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 SLC6A18Q96N87 628 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 ASPNQ9BXN1 380 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 ZNF350Q9GZX5 532 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 SAP130Q9H0E3 1048 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 QRSL1Q9H0R6 528 aaKnown RBP11.19□□□□□ -0.62
NUP54-202ENST00000502850 SYNPO2LQ9H987 977 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 EXOSC4Q9NPD3 245 aaKnown RBP11.19□□□□□ -0.62
NUP54-202ENST00000502850 CPNE7Q9UBL6 633 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 CDH10Q9Y6N8 788 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 TECTAO75443 2155 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 ATG2BQ96BY7 2078 aa11.19□□□□□ -0.62
NUP54-202ENST00000502850 BLACEA4D250 179 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 KRBA1A5PL33 1030 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 H0YGG7 62 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 P2RX6O15547 441 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 CHST10O43529 356 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 CTSVO60911 334 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 GPR75O95800 540 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 IGLV3-19P01714 112 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 GUSBP08236 651 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 TSPAN19P0C672 248 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 CPEP16870 476 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 RPS4Y1P22090 263 aaKnown RBP11.18□□□□□ -0.62
NUP54-202ENST00000502850 PTGER1P34995 402 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 PLA2G5P39877 138 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 MTNR1AP48039 350 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 RORCP51449 518 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 BLKP51451 505 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 ARF3P61204 181 aaPredicted RBP11.18□□□□□ -0.62
NUP54-202ENST00000502850 UBE2IP63279 158 aaKnown RBP11.18□□□□□ -0.62
NUP54-202ENST00000502850 BNC1Q01954 994 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 ZSWIM7Q19AV6 140 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 C6orf132Q5T0Z8 1188 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 ACSM5Q6NUN0 579 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 ARMC6Q6NXE6 501 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 ZNF836Q6ZNA1 936 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 KIF18BQ86Y91 864 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 COX18Q8N8Q8 333 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 SLC16A11Q8NCK7 471 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 CCL4L1Q8NHW4 92 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 FGF11Q92914 225 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 RNFT2Q96EX2 444 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 FAM46AQ96IP4 442 aaKnown RBP11.18□□□□□ -0.62
NUP54-202ENST00000502850 FCRL4Q96PJ5 515 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 COQ7Q99807 217 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 CCDC3Q9BQI4 270 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 IL20Q9NYY1 176 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 USP36Q9P275 1121 aaKnown RBP11.18□□□□□ -0.62
NUP54-202ENST00000502850 ZNF229Q9UJW7 825 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 TMEM5Q9Y2B1 443 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 CA5BQ9Y2D0 317 aa11.18□□□□□ -0.62
NUP54-202ENST00000502850 A0A1W2PS29 197 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 TRAPPC13A5PLN9 417 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GPX5O75715 221 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 IL1AP01583 271 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 NID1P14543 1247 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GABRG2P18507 467 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 EEF1A1P68104 462 aaKnown RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 SIM1P81133 766 aaPredicted RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 RUNX2Q13950 521 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 DSG2Q14126 1118 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 DUSP5Q16690 384 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 TBC1D25Q3MII6 688 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 EXOSC6Q5RKV6 272 aaKnown RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 ARMC4Q5T2S8 1044 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 FHL5Q5TD97 284 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 ZNF620Q6ZNG0 422 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 OLIG3Q7RTU3 272 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 PRICKLE2Q7Z3G6 844 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GDF7Q7Z4P5 450 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 LAPTM4BQ86VI4 370 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 LYSMD2Q8IV50 215 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GID4Q8IVV7 300 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 CSNK1A1LQ8N752 337 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 ANKK1Q8NFD2 765 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 OR2T33Q8NG76 320 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 ADAMTS18Q8TE60 1221 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 UFD1Q92890 307 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 SDF2Q99470 211 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 EGLN3Q9H6Z9 239 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 SMURF1Q9HCE7 757 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 POLMQ9NP87 494 aaPredicted RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 CTPS2Q9NRF8 586 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 ABCB10Q9NRK6 738 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 CLEC2DQ9UHP7 191 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 IQCMA0A1B0GVH7 501 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 C10orf142B7Z368 130 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 SLC30A4O14863 429 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms