RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 RBP1P09455 135 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 CHN1P15882 459 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 RPS4XP62701 263 aaKnown RBP13.16□□□□□ -0.3
TRAF4-212ENST00000498540 RAE1P78406 368 aaKnown RBP13.16□□□□□ -0.3
TRAF4-212ENST00000498540 OCRLQ01968 901 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 ZNF844Q08AG5 666 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 C2orf54Q08AI8 447 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 UBAP2Q5T6F2 1119 aaKnown RBP13.16□□□□□ -0.3
TRAF4-212ENST00000498540 LGSNQ5TDP6 509 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 MARCH3Q86UD3 253 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 FAM9CQ8IZT9 166 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 LILRB1Q8NHL6 650 aaPredicted RBP13.16□□□□□ -0.3
TRAF4-212ENST00000498540 RAB3IL1Q8TBN0 382 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 ZNF483Q8TF39 744 aaPredicted RBP13.16□□□□□ -0.3
TRAF4-212ENST00000498540 DUSP19Q8WTR2 217 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 REG4Q9BYZ8 158 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 PTGES2Q9H7Z7 377 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 SDHAF3Q9NRP4 125 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 TAS2R9Q9NYW1 312 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 SENP1Q9P0U3 644 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 VPS29Q9UBQ0 182 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 RNF14Q9UBS8 474 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 TMCO1Q9UM00 188 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 AP4B1Q9Y6B7 739 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 OVOL3O00110 214 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 EIF1AYO14602 144 aaKnown RBP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 PCDH7O60245 1069 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 SS18L1O75177 396 aaPredicted RBP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 SMIM24O75264 130 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 OR4F21O95013 312 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 PLGP00747 810 aaPredicted RBP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 SOD3P08294 240 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 MAGEA12P43365 314 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 EIF1AXP47813 144 aaKnown RBP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 CTBP2P56545 445 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 CAV1Q03135 178 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 TMEM44Q2T9K0 475 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 CTU2Q2VPK5 515 aaKnown RBP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 ALKBH2Q6NS38 261 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 SPATA4Q8NEY3 305 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 GMPPAQ96IJ6 420 aaPredicted RBP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 PRRG4Q9BZD6 226 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 SLC35C2Q9NQQ7 365 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 GIMAP4Q9NUV9 329 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 NMRK1Q9NWW6 199 aa13.15□□□□□ -0.3
TRAF4-212ENST00000498540 FAM120CQ9NX05 1096 aaKnown RBP13.15□□□□□ -0.3
TRAF4-212ENST00000498540 GNG14A0A1W2PPG7 69 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 MANBAO00462 879 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 COQ9O75208 318 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 TP53P04637 393 aaPredicted RBP13.14□□□□□ -0.31
TRAF4-212ENST00000498540 IL11P20809 199 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 ACVR1BP36896 505 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 CDKN1AP38936 164 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 PRSS53Q2L4Q9 553 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 GLYR1Q49A26 553 aaPredicted RBP13.14□□□□□ -0.31
TRAF4-212ENST00000498540 CYP27C1Q4G0S4 372 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 PODNL1Q6PEZ8 512 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 HIPK1Q86Z02 1210 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 SAMD14Q8IZD0 417 aaPredicted RBP13.14□□□□□ -0.31
TRAF4-212ENST00000498540 CDYL2Q8N8U2 506 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 OR10D3Q8NH80 312 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 C16orf78Q8WTQ4 265 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 NPAS1Q99742 590 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 EBPLQ9BY08 206 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 ACPTQ9BZG2 426 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 VDAC3Q9Y277 283 aa13.14□□□□□ -0.31
TRAF4-212ENST00000498540 UTP11Q9Y3A2 253 aaKnown RBP13.14□□□□□ -0.31
TRAF4-212ENST00000498540 IGLV3-32A0A0A0MS00 114 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 A8MT66 165 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 CD5LO43866 347 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 OPN1LWP04000 364 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 JUNP05412 331 aaKnown RBP13.13□□□□□ -0.31
TRAF4-212ENST00000498540 SBK3P0C264 359 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 DANCRP0C864 163 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 HSD3B1P14060 373 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 HSD3B2P26439 372 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 RFX3P48380 749 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 HTR6P50406 440 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 CSTF3Q12996 717 aaKnown RBP13.13□□□□□ -0.31
TRAF4-212ENST00000498540 ETFDHQ16134 617 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 DECR1Q16698 335 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 ADAM5Q6NVV9 412 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 TMEM107Q6UX40 140 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 APOOLQ6UXV4 268 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 BEND4Q6ZU67 534 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 NEUROG1Q92886 237 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 S100PBPQ96BU1 408 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 TRMT61AQ96FX7 289 aaKnown RBP13.13□□□□□ -0.31
TRAF4-212ENST00000498540 APIPQ96GX9 242 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 ADGRG7Q96K78 797 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 BBS4Q96RK4 519 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 C1QTNF3Q9BXJ4 246 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 SLCO5A1Q9H2Y9 848 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 C12orf49Q9H741 205 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 YAE1D1Q9NRH1 226 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 DMGDHQ9UI17 866 aaKnown RBP13.13□□□□□ -0.31
TRAF4-212ENST00000498540 RNF115Q9Y4L5 304 aa13.13□□□□□ -0.31
TRAF4-212ENST00000498540 MAGED1Q9Y5V3 778 aaPredicted RBP13.13□□□□□ -0.31
TRAF4-212ENST00000498540 NBEAL1Q6ZS30 2694 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms