RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	FBXW8	Q8N3Y1	598 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	ANKFN1	Q8N957	763 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	OR10A6	Q8NH74	314 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	TRNT1	Q96Q11	434 aa	Known RBP	13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	NODAL	Q96S42	347 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	GPATCH1	Q9BRR8	931 aa	Known RBP	13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	HES7	Q9BYE0	225 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	KAT8	Q9H7Z6	458 aa	Known RBP	13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	CALML5	Q9NZT1	146 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	AP3M1	Q9Y2T2	418 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	WDR45	Q9Y484	360 aa		13.37	□□□□□ -0.27
BRCA1-223	ENST00000494123	PRAMEF25	A6NGN4	478 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123		B2RBV5	119 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123		G3V3Y1	287 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	KLRC4-KLRK1	H3BQV0	150 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	ATXN7	O15265	892 aa	Predicted RBP	13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	H6PD	O95479	791 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	TFPT	P0C1Z6	253 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	BMP2	P12643	396 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	SLC7A2	P52569	658 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	CRISP3	P54108	245 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	KCNJ2	P63252	427 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	FUT5	Q11128	374 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	KLRB1	Q12918	225 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	GPR68	Q15743	365 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	GRAMD1B	Q3KR37	738 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	NADK2	Q4G0N4	442 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	TBCEL	Q5QJ74	424 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	SLC6A19	Q695T7	634 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	C16orf89	Q6UX73	402 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	GALNTL5	Q7Z4T8	443 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	ZAR1	Q86SH2	424 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	SERPINA11	Q86U17	422 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	C10orf111	Q8N326	155 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	FAM98A	Q8NCA5	519 aa	Known RBP	13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	SLC38A5	Q8WUX1	472 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	MAL2	Q969L2	176 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	PNPLA2	Q96AD5	504 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	SCMH1	Q96GD3	660 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	TMEM19	Q96HH6	336 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	TBL1XR1	Q9BZK7	514 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	ZNF350	Q9GZX5	532 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	HOXD1	Q9GZZ0	328 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	PIF1	Q9H611	641 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	SH2D2A	Q9NP31	389 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	A4GALT	Q9NPC4	353 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	POLE3	Q9NRF9	147 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	UBQLN4	Q9NRR5	601 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	CNOT11	Q9UKZ1	510 aa	Known RBP	13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	MKLN1	Q9UL63	735 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	PCDHGB6	Q9Y5F9	930 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	NBEA	Q8NFP9	2946 aa		13.36	□□□□□ -0.27
BRCA1-223	ENST00000494123	PRAMEF27	A3QJZ7	478 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SCD	O00767	359 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	FCMR	O60667	390 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	EVI2B	P34910	448 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	DCT	P40126	519 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	CASP3	P42574	277 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	GPR85	P60893	370 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SLC25A3	Q00325	362 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ZNF630	Q2M218	657 aa	Predicted RBP	13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	BICRAL	Q6AI39	1079 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	LRRC74B	Q6ZQY2	392 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	OLIG3	Q7RTU3	272 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	PTRH1	Q86Y79	214 aa	Known RBP	13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ZNF614	Q8N883	585 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ZNF527	Q8NB42	609 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	LSM14A	Q8ND56	463 aa	Known RBP	13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	NFKBID	Q8NI38	313 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	GRHL3	Q8TE85	626 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	DOHH	Q9BU89	302 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SPATA9	Q9BWV2	254 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	OSBPL11	Q9BXB4	747 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	TMEM38A	Q9H6F2	299 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	CACYBP	Q9HB71	228 aa	Known RBP	13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SPAG4	Q9NPE6	437 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	FLRT3	Q9NZU0	649 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	LUZP4	Q9P127	313 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ABCG2	Q9UNQ0	655 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	KMT2B	Q9UMN6	2715 aa	Predicted RBP	13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	EML6	Q6ZMW3	1958 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	NPIPA5	A0A0B4J1W7	369 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	NPIPA7	E9PJI5	369 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SCO2	O43819	266 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	PEX1	O43933	1283 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	CHRM4	P08173	479 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	NPIPA8	P0DM63	369 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	T-ENOL	P0DO92	83 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ARAF	P10398	606 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	CNR1	P21554	472 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	MASP1	P48740	699 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	CDK6	Q00534	326 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	CHRNE	Q04844	493 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	RBBP4	Q09028	425 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SNTA1	Q13424	505 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SCARB2	Q14108	478 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	PLEKHN1	Q494U1	663 aa	Predicted RBP	13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	TYW3	Q6IPR3	259 aa	Known RBP	13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SLC30A6	Q6NXT4	461 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	C8orf82	Q6P1X6	216 aa	Predicted RBP	13.35	□□□□□ -0.27

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