RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 HCN1O60741 890 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 AGFG2O95081 481 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 LCN1P31025 176 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 PTGS2P35354 604 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 MDH1P40925 334 aaKnown RBP14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CDKN2CP42773 168 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CA7P43166 264 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CLK3P49761 638 aaKnown RBP14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 GAS1P54826 345 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 UBAP2LQ14157 1087 aaKnown RBP14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 GRAMD1BQ3KR37 738 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 DCST2Q5T1A1 773 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CCNJQ5T5M9 372 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ZAR1Q86SH2 424 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 MIPOL1Q8TD10 442 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NEURL3Q96EH8 262 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 EXO5Q9H790 373 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ACKR4Q9NPB9 350 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 SH3BGRL2Q9UJC5 107 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TRIM33Q9UPN9 1127 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 HRH3Q9Y5N1 445 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 KCNE3Q9Y6H6 103 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NBASA2RRP1 2371 aa14.86□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 GCN1Q92616 2671 aaKnown RBP14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 DUXAA6NLW8 204 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 AQP7O14520 342 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 PRRG2O14669 202 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 LRRTM2O43300 516 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TRAPPC6AO75865 159 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 OXSR1O95747 527 aaPredicted RBP14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NCF2P19878 526 aaPredicted RBP14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ATP6V1C1P21283 382 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 KHKP50053 298 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 RCAN2Q14206 197 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ESPL1Q14674 2120 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TOMM20Q15388 145 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 C3AR1Q16581 482 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ZNF621Q6ZSS3 439 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 PLCZ1Q86YW0 608 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 WDSUB1Q8N9V3 476 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NEIL3Q8TAT5 605 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 FAM57AQ8TBR7 257 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 RELTQ969Z4 430 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 VPS33AQ96AX1 596 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 DTNBP1Q96EV8 351 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ITCHQ96J02 903 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TMEM120AQ9BXJ8 343 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TBL1XR1Q9BZK7 514 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 SLC6A15Q9H2J7 730 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 OR51I1Q9H343 314 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 SERHLQ9NQF3 203 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 SDHAF3Q9NRP4 125 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 FBXO34Q9NWN3 711 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CCDC167Q9P0B6 97 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 PPP4R1LQ9P1A2 415 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ERRFI1Q9UJM3 462 aaPredicted RBP14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TINAGQ9UJW2 476 aa14.85□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 HELZ2Q9BYK8 2649 aaKnown RBP14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NCKAP5O14513 1909 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 OR14I1A6ND48 311 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NR5A2O00482 541 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ADAM10O14672 748 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CBR3O75828 277 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 AK1P00568 194 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 HPNP05981 417 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 GSNP06396 782 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TPOP07202 933 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NGFRP08138 427 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TRPC1P48995 793 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CASP9P55211 416 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 STX5Q13190 355 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CGB2Q6NT52 195 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TNFAIP8L2Q6P589 184 aaPredicted RBP14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 DNAJC14Q6Y2X3 702 aaPredicted RBP14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 MARCH3Q86UD3 253 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 CD163Q86VB7 1156 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 FJX1Q86VR8 437 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 FUNDC1Q8IVP5 155 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 OR4K17Q8NGC6 315 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 RABEP2Q9H5N1 569 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 EXD2Q9NVH0 621 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 TMEM45AQ9NWC5 275 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 SVILO95425 2214 aa14.84□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 NINQ8N4C6 2090 aa14.83□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 C17orf51A8MQB3 221 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 ALG1L2C9J202 215 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 NPIPA2E9PIF3 369 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 NPIPA3F8WFD2 350 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 SCDO00767 359 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 ANP32DO95626 131 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 ANGPTL1O95841 491 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 AGR2O95994 175 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 ZCCHC18P0CG32 403 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 OR12D1P0DN82 309 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 HPGDP15428 266 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 ENDOUP21128 410 aaKnown RBP14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 TBXA2RP21731 343 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 PER3P56645 1201 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 AGKQ53H12 422 aa14.83□□□□□ -0.04
MSH5-SAPCD1-206ENST00000491552 C6orf10Q5SRN2 563 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms