RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CCDC103Q8IW40 242 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 SLC35A4Q96G79 324 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 MS4A4EQ96PG1 132 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF607Q96SK3 696 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 WFDC6Q9BQY6 131 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 LRRN3Q9H3W5 708 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PTGFRNQ9P2B2 879 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 MUC6Q6W4X9 2439 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 FITM1A5D6W6 292 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 OR2W5A6NFC9 320 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 H3BMH7 237 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ADAMDEC1O15204 470 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 GDF9O60383 454 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 SEMA7AO75326 666 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ZIC2O95409 532 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 EPPINO95925 133 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PPP2R1BP30154 601 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 LIMS1P48059 325 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 IDH2P48735 452 aaKnown RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ARHGDIAP52565 204 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 MAT1AQ00266 395 aaKnown RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 RFX4Q33E94 735 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 TRMT12Q53H54 448 aaKnown RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PRAMEF8Q5VWM4 474 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PRAMEF7Q5VXH5 474 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 HEPHL1Q6MZM0 1159 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 CDC73Q6P1J9 531 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 SLC22A16Q86VW1 577 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PRSS33Q8NF86 280 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 OR6C4Q8NGE1 309 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 OR6Q1Q8NGQ2 317 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 HTRA1Q92743 480 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 LGALS12Q96DT0 336 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PIP5K1AQ99755 562 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 APOL4Q9BPW4 351 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 LRFN3Q9BTN0 628 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ABCB10Q9NRK6 738 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 HCN3Q9P1Z3 774 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 C19orf53Q9UNZ5 99 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 TMEM184BQ9Y519 407 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PCDHGA6Q9Y5G7 932 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 IGHV5-10-1A0A0J9YXX1 117 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 LOC100506127A0A0U1RQW1 187 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 HYKKA2RU49 373 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 TGFBR3LH3BV60 316 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 TNFRSF11BO00300 401 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 FFAR1O14842 300 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ACP2P11117 423 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 DBTP11182 482 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ITGA2P17301 1181 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 GADD45AP24522 165 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ST13P50502 369 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SPIBQ01892 262 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 IL18R1Q13478 541 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 KEAP1Q14145 624 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 DOC2BQ14184 412 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 CCDC157Q569K6 752 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 DBX2Q6ZNG2 339 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 DGAT2L6Q6ZPD8 337 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 LACC1Q8IV20 430 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 D2HGDHQ8N465 521 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SLC5A8Q8N695 610 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 OR9Q2Q8NGE9 314 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 OR1L3Q8NH93 324 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 HPS1Q92902 700 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SLC41A2Q96JW4 573 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 FEVQ99581 238 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 MROQ9BYG7 248 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 RBCK1Q9BYM8 510 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SLIRPQ9GZT3 109 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SLC38A1Q9H2H9 487 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 PALMDQ9NP74 551 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ACER3Q9NUN7 267 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 GIN1Q9NXP7 522 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 GPR83Q9NYM4 423 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 MAT2BQ9NZL9 334 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SEMA5BQ9P283 1151 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 RHCGQ9UBD6 479 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 KCND3Q9UK17 655 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 CAB39Q9Y376 341 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 RBMX2Q9Y388 322 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 DSPPQ9NZW4 1301 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 RIF1Q5UIP0 2472 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 A0A0G2JPF8 293 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 EFCAB9A8MZ26 197 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 HNRNPCL2B2RXH8 293 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 HNRNPCL3B7ZW38 293 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 E9PQ18 207 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 M0R082 166 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 KPNA4O00629 521 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SLC22A1O15245 554 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 HYAL3O43820 417 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 NSA2O95478 260 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 IFNW1P05000 195 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ADRA2AP08913 450 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 CT62P0C5K7 136 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF806P0C7X5 589 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 HNRNPCL4P0DMR1 293 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 RHCEP18577 417 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 CDH12P55289 794 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms