RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	POLR2J	P52435	117 aa	Known RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MAP4K2	Q12851	820 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MYBPH	Q13203	477 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TP53BP2	Q13625	1128 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TERF2	Q15554	542 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MAPRE2	Q15555	327 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MMEL1	Q495T6	779 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	AGK	Q53H12	422 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TMEM198	Q66K66	360 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	ANKRD26P1	Q6NSI1	321 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	BHLHB9	Q6PI77	547 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	RNF111	Q6ZNA4	994 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	SLC29A4	Q7RTT9	530 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MAVS	Q7Z434	540 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	RPS19BP1	Q86WX3	136 aa	Known RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	CCDC71	Q8IV32	467 aa	Predicted RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	EID3	Q8N140	333 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	RPRML	Q8N4K4	120 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	SLC5A8	Q8N695	610 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	KRTCAP2	Q8N6L1	136 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TRIML2	Q8N7C3	387 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	B3GNT7	Q8NFL0	401 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	OR7G1	Q8NGA0	311 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	OR7A2P	Q8NGA2	310 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	OR5P2	Q8WZ92	322 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	COQ8B	Q96D53	544 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	VMP1	Q96GC9	406 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	SENP5	Q96HI0	755 aa	Predicted RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	FANCD2OS	Q96PS1	177 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	OR52E6	Q96RD3	313 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TREX2	Q9BQ50	279 aa	Predicted RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	OR8D2	Q9GZM6	311 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MMP25	Q9NPA2	562 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	ACSS1	Q9NUB1	689 aa	Predicted RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TMEM45A	Q9NWC5	275 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	CCDC167	Q9P0B6	97 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TNFRSF10D	Q9UBN6	386 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	ARL2BP	Q9Y2Y0	163 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	SNX8	Q9Y5X2	465 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	IGKV3D-11	A0A0A0MRZ8	115 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	SAGE2P	A6NJ88	616 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	NDUFAB1	O14561	156 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ANGPT2	O15123	496 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	HS6ST1	O60243	411 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	NME2P1	O60361	137 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	SNX3	O60493	162 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	DCTN3	O75935	186 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	TOX	O94900	526 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	FAM107A	O95990	144 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ATP1B1	P05026	303 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	PGR	P06401	933 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ALDOC	P09972	364 aa	Known RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	LAMP1	P11279	417 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	FOSL1	P15407	271 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	IGFBP2	P18065	325 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	KLK2	P20151	261 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ADSL	P30566	484 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	CYB561	P49447	251 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	PRKAG1	P54619	331 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	C21orf58	P58505	322 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	SLC26A5	P58743	744 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	IGLV3-21	P80748	117 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	PRR5	P85299	388 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	HSPB3	Q12988	150 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	STX5	Q13190	355 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ZNHIT3	Q15649	155 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF750	Q32MQ0	723 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	FAM174B	Q3ZCQ3	159 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	OR4F3	Q6IEY1	312 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	FAM180B	Q6P0A1	224 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	SEZ6L2	Q6UXD5	910 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	HSDL2	Q6YN16	418 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF621	Q6ZSS3	439 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	SZRD1	Q7Z422	152 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF227	Q86WZ6	799 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	RIMKLA	Q8IXN7	391 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	CCDC197	Q8NCU1	140 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ADCY4	Q8NFM4	1077 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	OR8J2	Q8NGG1	315 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	OR4A15	Q8NGL6	344 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	LILRB4	Q8NHJ6	448 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	FAM57A	Q8TBR7	257 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	BCAS4	Q8TDM0	211 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	PTPMT1	Q8WUK0	201 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	RND1	Q92730	232 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	TESC	Q96BS2	214 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ERP27	Q96DN0	273 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	CNRIP1	Q96F85	164 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF764	Q96H86	408 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	ITCH	Q96J02	903 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	AMDHD1	Q96NU7	426 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	LIME1	Q9H400	295 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	GLIPR2	Q9H4G4	154 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	CXorf21	Q9HAI6	301 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	KCNJ16	Q9NPI9	418 aa		8.03	□□□□□ -1.12
USP4-213	ENST00000488520	SDR39U1	Q9NRG7	319 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	CCM2L	Q9NUG4	571 aa	Predicted RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	DDX18	Q9NVP1	670 aa	Known RBP	8.03	□□□□□ -1.12
USP4-213	ENST00000488520	TAS2R9	Q9NYW1	312 aa		8.03	□□□□□ -1.12

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms