RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PRAMEF2O60811 474 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 CNOT3O75175 753 aaKnown RBP13.16□□□□□ -0.3
CUX1-209ENST00000487284 CLIC3O95833 236 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 KLK3P07288 261 aaPredicted RBP13.16□□□□□ -0.3
CUX1-209ENST00000487284 CDH2P19022 906 aaPredicted RBP13.16□□□□□ -0.3
CUX1-209ENST00000487284 AGXTP21549 392 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 RPS4Y1P22090 263 aaKnown RBP13.16□□□□□ -0.3
CUX1-209ENST00000487284 PIGAP37287 484 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 EFNA3P52797 238 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 FUT7Q11130 342 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 MICAQ29983 383 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 EXOC3L2Q2M3D2 409 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 MINDY4Q4G0A6 757 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 ZNF311Q5JNZ3 666 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 COLEC12Q5KU26 742 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 FAM198BQ6UWH4 519 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 TIPARPQ7Z3E1 657 aaKnown RBP13.16□□□□□ -0.3
CUX1-209ENST00000487284 HMGN2P46Q86SG4 172 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 VRK2Q86Y07 508 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 RBM45Q8IUH3 476 aaKnown RBP13.16□□□□□ -0.3
CUX1-209ENST00000487284 TMEM151BQ8IW70 566 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 PRSS58Q8IYP2 241 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 OFCC1Q8IZS5 231 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 ZNF619Q8N2I2 560 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 C7orf57Q8NEG2 295 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 ZNF555Q8NEP9 628 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 OR10G2Q8NGC3 310 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 OR52P1PQ8NH57 321 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 STT3BQ8TCJ2 826 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 GPR151Q8TDV0 419 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 PMM1Q92871 262 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 ZG16BQ96DA0 208 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 FAM122AQ96E09 287 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 ARHGDIGQ99819 225 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 WFDC6Q9BQY6 131 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 POLE3Q9NRF9 147 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 KIF17Q9P2E2 1029 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 MKLN1Q9UL63 735 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 IFT52Q9Y366 437 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 CHST2Q9Y4C5 530 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 HEMK1Q9Y5R4 338 aaPredicted RBP13.16□□□□□ -0.3
CUX1-209ENST00000487284 H3BNH8 94 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 HRKO00198 91 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 KIAA0513O60268 411 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 MITFO75030 526 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 STX11O75558 287 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 THBS1P07996 1170 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 GUSBP08236 651 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SMIM18P0DKX4 95 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SSTR4P31391 388 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 GABRA3P34903 492 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 PLA2G5P39877 138 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 POU6F2P78424 691 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 PSG6Q00889 435 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 RHAGQ02094 409 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 ZNF267Q14586 743 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 GANABQ14697 944 aaKnown RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 MFSD4BQ5TF39 518 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 MRPL14Q6P1L8 145 aaKnown RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 ZNF517Q6ZMY9 492 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 DEF8Q6ZN54 512 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SHISA6Q6ZSJ9 500 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 OVCH1Q7RTY7 1134 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 LAPTM4BQ86VI4 370 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 PEX5LQ8IYB4 626 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 ATG16L2Q8NAA4 619 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 PIK3R3Q92569 461 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 FKBP10Q96AY3 582 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 VSTM2LQ96N03 204 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 PTCHD1Q96NR3 888 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SLC46A1Q96NT5 459 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 MUS81Q96NY9 551 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 KRT84Q9NSB2 600 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 A4GNTQ9UNA3 340 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 ZNF443Q9Y2A4 671 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 A6NHS1 94 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 AGAP5A6NIR3 686 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 TTC36A6NLP5 189 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 E9PQ18 207 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 IFNA16P05015 189 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 H1F0P07305 194 aaKnown RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 ZGLP1P0C6A0 271 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 ANXA8P13928 327 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 FUT4P22083 530 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SLC5A2P31639 672 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SMIM11AP58511 58 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 OCA2Q04671 838 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 FOXC1Q12948 553 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 IL18R1Q13478 541 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 CAMK2BQ13554 666 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 ZNHIT3Q15649 155 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 NPTX1Q15818 432 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 CCNJQ5T5M9 372 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 C6orf15Q6UXA7 325 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 GALNT5Q7Z7M9 940 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SLC5A8Q8N695 610 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 ZNF615Q8N8J6 731 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 OR6T1Q8NGN1 323 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 OR52J3Q8NH60 311 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 PHF10Q8WUB8 498 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms