RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TGM6O95932 706 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 PRPS2P11908 318 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 GCKP35557 465 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 BCL2A1Q16548 175 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 DECR1Q16698 335 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 AAGABQ6PD74 315 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 EXOC3L1Q86VI1 746 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 OR4K17Q8NGC6 315 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 FAM110BQ8TC76 370 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 DUSP19Q8WTR2 217 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 NUDT8Q8WV74 236 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 PPCDCQ96CD2 204 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 C3orf30Q96M34 536 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 GPATCH1Q9BRR8 931 aaKnown RBP16.79■□□□□ 0.28
COL7A1-209ENST00000474432 EQTNQ9NQ60 294 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 RASSF1Q9NS23 344 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 DNAJB12Q9NXW2 375 aaKnown RBP16.79■□□□□ 0.28
COL7A1-209ENST00000474432 FOXD3Q9UJU5 478 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-209ENST00000474432 DKKL1Q9UK85 242 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 TMED5Q9Y3A6 229 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 ITPR3Q14573 2671 aa16.79■□□□□ 0.28
COL7A1-209ENST00000474432 NUP214P35658 2090 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-209ENST00000474432 IGLV3-32A0A0A0MS00 114 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 TTC36A6NLP5 189 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 H0YC42 278 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 TYROBPO43914 113 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 TNFSF13O75888 250 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 UTS2O95399 124 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ACP2P11117 423 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 EFNA1P20827 205 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 PEX19P40855 299 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ETV4P43268 484 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 DGKQP52824 942 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 SUCLG1P53597 346 aaKnown RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 TPD52P55327 224 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 DAZAP2Q15038 168 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 TMEM44Q2T9K0 475 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 GRAMD1BQ3KR37 738 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 GALNTL6Q49A17 601 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ZAR1Q86SH2 424 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 FAM222BQ8WU58 562 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 CAVIN3Q969G5 261 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 INTS12Q96CB8 462 aaKnown RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ZFP3Q96NJ6 502 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 TM9SF2Q99805 663 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ROPN1BQ9BZX4 212 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ROPN1Q9HAT0 212 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 SIRT3Q9NTG7 399 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ACSS1Q9NUB1 689 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-209ENST00000474432 SH3BP4Q9P0V3 963 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ATP6V1HQ9UI12 483 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 ZNF337Q9Y3M9 751 aa16.78■□□□□ 0.28
COL7A1-209ENST00000474432 PRRC2AP48634 2157 aaKnown RBP16.77■□□□□ 0.28
COL7A1-209ENST00000474432 A6NNC1 897 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 HK1P19367 917 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 PRR5P85299 388 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 STX5Q13190 355 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 ZNHIT3Q15649 155 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-209ENST00000474432 WDR93Q6P2C0 686 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 DDIASQ8IXT1 998 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 GCNT2Q8N0V5 402 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 SLC16A11Q8NCK7 471 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 NUP43Q8NFH3 380 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 OR5M1Q8NGP8 315 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 OR4C3Q8NH37 302 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 MTERF3Q96E29 417 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 C1GALT1C1Q96EU7 318 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 ZBED6CLQ96FA7 236 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-209ENST00000474432 RMND5BQ96G75 393 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-209ENST00000474432 C16orf58Q96GQ5 468 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 TMEM109Q9BVC6 243 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 SFXN3Q9BWM7 321 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 POLDIP3Q9BY77 421 aaKnown RBP16.77■□□□□ 0.28
COL7A1-209ENST00000474432 IQCGQ9H095 443 aaKnown RBP16.77■□□□□ 0.28
COL7A1-209ENST00000474432 SDHAF3Q9NRP4 125 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 FBXO34Q9NWN3 711 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 ZDHHC2Q9UIJ5 367 aa16.77■□□□□ 0.28
COL7A1-209ENST00000474432 MTORP42345 2549 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 OR2M5A3KFT3 312 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 EEF1E1-BLOC1S5C9J1V9 151 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 EEF1E1O43324 174 aaKnown RBP16.76■□□□□ 0.27
COL7A1-209ENST00000474432 CHEK2O96017 543 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 BPGMP07738 259 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 GPC1P35052 558 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 RFX3P48380 749 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 IST1P53990 364 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 PRKAG1P54619 331 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 MANFP55145 182 aaKnown RBP16.76■□□□□ 0.27
COL7A1-209ENST00000474432 SORDQ00796 357 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 DUSP5Q16690 384 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 MFSD12Q6NUT3 480 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 EMBQ6PCB8 327 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 GALNT10Q86SR1 603 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 CDRT4Q8N9R6 151 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 OR7A2PQ8NGA2 310 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 LINC01560Q8TB33 94 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 AGR3Q8TD06 166 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 GPR151Q8TDV0 419 aa16.76■□□□□ 0.27
COL7A1-209ENST00000474432 KLHDC3Q9BQ90 382 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms