RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 COX18Q8N8Q8 333 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 OR9I1Q8NGQ6 314 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 THOC1Q96FV9 657 aaKnown RBP18.22■□□□□ 0.51
COL9A3-202ENST00000452372 BTBD2Q9BX70 525 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 CCDC134Q9H6E4 229 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 GALNT9Q9HCQ5 603 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 NPHS2Q9NP85 383 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 B4GALT7Q9UBV7 327 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 DCTN4Q9UJW0 460 aa18.22■□□□□ 0.51
COL9A3-202ENST00000452372 RNF103-CHMP3A0A140T963 221 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 A0A1B0GTH9 108 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 C2orf72A6NCS6 295 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 SNPHO15079 494 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 FADS1O60427 444 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 SLC19A2O60779 497 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 PDE9AO76083 593 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 MDH1P40925 334 aaKnown RBP18.21■□□□□ 0.51
COL9A3-202ENST00000452372 RFX3P48380 749 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 GAS1P54826 345 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 POU6F2P78424 691 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-202ENST00000452372 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.21■□□□□ 0.51
COL9A3-202ENST00000452372 ARHGAP11AQ6P4F7 1023 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 ANGPTL8Q6UXH0 198 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 FGD2Q7Z6J4 655 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 OR1J4Q8NGS1 313 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 RFWD2Q8NHY2 731 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 OTUB1Q96FW1 271 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-202ENST00000452372 CHMP6Q96FZ7 201 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 GNRHR2Q96P88 292 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 UBQLN3Q9H347 655 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 ACKR4Q9NPB9 350 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 ABCG2Q9UNQ0 655 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 C15orf41Q9Y2V0 281 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 PCDHGB3Q9Y5G1 929 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 PKDREJQ9NTG1 2253 aa18.21■□□□□ 0.51
COL9A3-202ENST00000452372 A0A1B0GUH1 482 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 A0A1B0GVC2 190 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 FAM234BA2RU67 622 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 GNB5O14775 395 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 UTS2O95399 124 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 CELA3AP09093 270 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 MATN1P21941 496 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 PTPN6P29350 595 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 LCN1P31025 176 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 EVI2BP34910 448 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 ATP4BP51164 291 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 PER3P56645 1201 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 FIGNL1Q6PIW4 674 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 Q6ZPB1 254 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-202ENST00000452372 MSANTD1Q6ZTZ1 278 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 TRILQ7L0X0 811 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 WDSUB1Q8N9V3 476 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 CDS1Q92903 461 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 PANX1Q96RD7 426 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 INPP5KQ9BT40 448 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 G6PC3Q9BUM1 346 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 SERHLQ9NQF3 203 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 TMEM45AQ9NWC5 275 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 FLRT3Q9NZU0 649 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 WIF1Q9Y5W5 379 aa18.2■□□□□ 0.5
COL9A3-202ENST00000452372 A0A0G2JND7 137 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 CCDC154A6NI56 674 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 DUXAA6NLW8 204 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 DYNC1I1O14576 645 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 ADAM10O14672 748 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 ZNHIT1O43257 154 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 SUSD5O60279 629 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 CBR3O75828 277 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 VIMP08670 466 aaKnown RBP18.19■□□□□ 0.5
COL9A3-202ENST00000452372 ABOP16442 354 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 GDF1P27539 372 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 PTGS2P35354 604 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 CA7P43166 264 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 SAXO2Q658L1 398 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 SP5Q6BEB4 398 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-202ENST00000452372 FUNDC1Q8IVP5 155 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 TRIML2Q8N7C3 387 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 MIPOL1Q8TD10 442 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 NEURL3Q96EH8 262 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 SLC35G5Q96KT7 338 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 OR7D2Q96RA2 312 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 SERHL2Q9H4I8 314 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 FGFR1OP2Q9NVK5 253 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 FBXO34Q9NWN3 711 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 LIPGQ9Y5X9 500 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 KCNE3Q9Y6H6 103 aa18.19■□□□□ 0.5
COL9A3-202ENST00000452372 TRGV8A0A0C4DH27 118 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 HCN1O60741 890 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 HPNP05981 417 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 NGFRP08138 427 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 TROVE2P10155 538 aaKnown RBP eCLIP18.18■□□□□ 0.53e-9■□□□□ 9.6
COL9A3-202ENST00000452372 PRF1P14222 555 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 CDKN2CP42773 168 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 CLK3P49761 638 aaKnown RBP18.18■□□□□ 0.5
COL9A3-202ENST00000452372 RPS26P62854 115 aaKnown RBP18.18■□□□□ 0.5
COL9A3-202ENST00000452372 GRAMD1BQ3KR37 738 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 BLOC1S3Q6QNY0 202 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 ZNF621Q6ZSS3 439 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 GALNT10Q86SR1 603 aa18.18■□□□□ 0.5
COL9A3-202ENST00000452372 PLCZ1Q86YW0 608 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms