RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 GPLD1P80108 840 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 LDB1Q86U70 411 aaPredicted RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 ZNF101Q8IZC7 436 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 NFKBIDQ8NI38 313 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 THBS1P07996 1170 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 ACSM4P0C7M7 580 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 AKR1C4P17516 323 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 CNR1P21554 472 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 NFATC4Q14934 902 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 ARHGAP11BQ3KRB8 267 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 PET117Q6UWS5 81 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 SLC16A13Q7RTY0 426 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 C2orf73Q8N5S3 287 aaPredicted RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 GPR26Q8NDV2 337 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 CHTF18Q8WVB6 975 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 TRIB2Q92519 343 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 TEPSINQ96N21 525 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 SEMA4CQ9C0C4 833 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 NLGN3Q9NZ94 848 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 ENPP3O14638 875 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ALDOAP04075 364 aaKnown RBP12.6□□□□□ -0.39
USP40-208ENST00000450966 C8GP07360 202 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 IQCF3P0C7M6 154 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 HCAR3P49019 387 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 SLC11A1P49279 550 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 SNRPEP62304 92 aaKnown RBP12.6□□□□□ -0.39
USP40-208ENST00000450966 GPR33Q49SQ1 333 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 FBXO48Q5FWF7 155 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CCNJQ5T5M9 372 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 POMZP3Q6PJE2 187 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 LINGO4Q6UY18 593 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 TAC4Q86UU9 113 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ACBD7Q8N6N7 88 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ZBED6CLQ96FA7 236 aaPredicted RBP12.6□□□□□ -0.39
USP40-208ENST00000450966 FGFBP2Q9BYJ0 223 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 OSBPL2Q9H1P3 480 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CTPS2Q9NRF8 586 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 MIOXQ9UGB7 285 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 LAMTOR5O43504 91 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 TLX3O43711 291 aaPredicted RBP12.6□□□□□ -0.39
USP40-208ENST00000450966 ZNF623O75123 536 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ATG12O94817 140 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CLEC2LP0C7M8 214 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ZNF30P17039 623 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 MTNR1AP48039 350 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 GPR143P51810 404 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 HTD2P86397 168 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 DSC2Q02487 901 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 MFSD6LQ8IWD5 586 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ANKUB1A6NFN9 424 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 SUOXP51687 545 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 GPR139Q6DWJ6 353 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 IGDCC3Q8IVU1 814 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 OR5D16Q8NGK9 328 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 HPSE2Q8WWQ2 592 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 LRR1Q96L50 414 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 FEVQ99581 238 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ZNF226Q9NYT6 803 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 A0A1W2PRU2 124 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 OR2AG2A6NM03 316 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 AKR7A2O43488 359 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 LILRB5O75023 590 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 SLURP2P0DP57 97 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 LYPD4Q6UWN0 246 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CPNE8Q86YQ8 564 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 UBAC2Q8NBM4 344 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 NETO2Q8NC67 525 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 STEAP2Q8NFT2 490 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 OR5M8Q8NGP6 311 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CA5BP1Q8WTZ4 195 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ZNF778Q96MU6 729 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 PIGQQ9BRB3 760 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 SRMSQ9H3Y6 488 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 RDH14Q9HBH5 336 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 SLC6A20Q9NP91 592 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 BACE2Q9Y5Z0 518 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 PSMD9O00233 223 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 OR1F1O43749 312 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 OR2C1O95371 312 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CYP17A1P05093 508 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CD1EP15812 388 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 SOX3P41225 446 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 GRK6P43250 576 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 PLD6Q8N2A8 252 aaKnown RBP12.6□□□□□ -0.39
USP40-208ENST00000450966 KDM8Q8N371 416 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 CCDC54Q8NEL0 328 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 TMEM18Q96B42 140 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 ZBTB8AQ96BR9 441 aa12.6□□□□□ -0.39
USP40-208ENST00000450966 PURGQ9UJV8 347 aaKnown RBP12.6□□□□□ -0.39
USP40-208ENST00000450966 MAFKO60675 156 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 CYBAP13498 195 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 NQO2P16083 231 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 IL12BP29460 328 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 PRSS3P35030 304 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 DIO3P55073 304 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 NFKB2Q00653 900 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 C6orf136Q5SQH8 315 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 DBX2Q6ZNG2 339 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 KANSL1Q7Z3B3 1105 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 ZFAND4Q86XD8 727 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms