RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 HDAC3O15379 428 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 HNRNPRO43390 633 aaKnown RBP13.83□□□□□ -0.2
LIMS3-201ENST00000437679 FADS1O60427 444 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 UTS2O95399 124 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 ACTL6AO96019 429 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 HMGN2P05204 90 aaKnown RBP13.83□□□□□ -0.2
LIMS3-201ENST00000437679 KRT16P08779 473 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 GLI4P10075 376 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 ACP2P11117 423 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 BMP7P18075 431 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 CHRNB4P30926 498 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 SRD5A2P31213 254 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 CCT3P49368 545 aaKnown RBP13.83□□□□□ -0.2
LIMS3-201ENST00000437679 GAS1P54826 345 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 TP53BP2Q13625 1128 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 LASP1Q14847 261 aaKnown RBP13.83□□□□□ -0.2
LIMS3-201ENST00000437679 SF3B4Q15427 424 aaKnown RBP eCLIP13.83□□□□□ -0.2
LIMS3-201ENST00000437679 CDSNQ15517 529 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 DUSP5Q16690 384 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 RTL6Q6ICC9 239 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 OR5M10Q6IEU7 315 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 IFNEQ86WN2 208 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 ULK2Q8IYT8 1036 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 COX18Q8N8Q8 333 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 SLC16A11Q8NCK7 471 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 SFXN5Q8TD22 340 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 ARL8AQ96BM9 186 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 YIPF4Q9BSR8 244 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 UGT2B28Q9BY64 529 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 TBL1XR1Q9BZK7 514 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 RUBCNLQ9H714 662 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 TAS2R10Q9NYW0 307 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 FLRT3Q9NZU0 649 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 MARCOQ9UEW3 520 aaPredicted RBP13.83□□□□□ -0.2
LIMS3-201ENST00000437679 DKKL1Q9UK85 242 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 FBXL2Q9UKC9 423 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 CAMK2AQ9UQM7 478 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 ARHGAP21Q5T5U3 1957 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 SDHDO14521 159 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 KITP10721 976 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 DPP4P27487 766 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 SOAT1P35610 550 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 KIR3DL1P43629 444 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 CLNS1AP54105 237 aaKnown RBP13.82□□□□□ -0.2
LIMS3-201ENST00000437679 STX5Q13190 355 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 OGFOD2Q6N063 350 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 BHLHB9Q6PI77 547 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 FIGNL1Q6PIW4 674 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 ENPP6Q6UWR7 440 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 HDXQ7Z353 690 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 CCDC71Q8IV32 467 aaPredicted RBP13.82□□□□□ -0.2
LIMS3-201ENST00000437679 WDR75Q8IWA0 830 aaKnown RBP13.82□□□□□ -0.2
LIMS3-201ENST00000437679 GOLGA6L1Q8N7Z2 621 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 LILRB4Q8NHJ6 448 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 ATP6V1G3Q96LB4 118 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 STACQ99469 402 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 BTBD2Q9BX70 525 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 ACTRT3Q9BYD9 372 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 PRDM14Q9GZV8 571 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 DSN1Q9H410 356 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 CXorf36Q9H7Y0 433 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 PCDHGB4Q9UN71 923 aa13.82□□□□□ -0.2
LIMS3-201ENST00000437679 FAF1Q9UNN5 650 aaPredicted RBP13.82□□□□□ -0.2
LIMS3-201ENST00000437679 MRPS18CQ9Y3D5 142 aaKnown RBP13.82□□□□□ -0.2
LIMS3-201ENST00000437679 RNASET2O00584 256 aaKnown RBP13.81□□□□□ -0.2
LIMS3-201ENST00000437679 SOX30O94993 753 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 KCNK2O95069 426 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 IGKV1D-16P01601 117 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 ZFP36L2P47974 494 aaKnown RBP13.81□□□□□ -0.2
LIMS3-201ENST00000437679 DSCR4P56555 118 aaPredicted RBP13.81□□□□□ -0.2
LIMS3-201ENST00000437679 HBA1P69905 142 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 POU6F2P78424 691 aaPredicted RBP13.81□□□□□ -0.2
LIMS3-201ENST00000437679 OCRLQ01968 901 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 DPY19L1Q2PZI1 675 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 GRAMD1BQ3KR37 738 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 RIPPLY2Q5TAB7 128 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 ANXA8L1Q5VT79 327 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 OR4F3Q6IEY1 312 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 CDC73Q6P1J9 531 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 AAGABQ6PD74 315 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 SPATA19Q7Z5L4 167 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 MARCH3Q86UD3 253 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 FADS6Q8N9I5 356 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 VPS37AQ8NEZ2 397 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 OR2M3Q8NG83 312 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 OR8J2Q8NGG1 315 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 FAM110BQ8TC76 370 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 ADAMTS15Q8TE58 950 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 DUSP19Q8WTR2 217 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 MARVELD3Q96A59 401 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 OTUB1Q96FW1 271 aaPredicted RBP13.81□□□□□ -0.2
LIMS3-201ENST00000437679 WDYHV1Q96HA8 205 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 SFXN2Q96NB2 322 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 G6PC3Q9BUM1 346 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 PIGUQ9H490 435 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 PTGES2Q9H7Z7 377 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 HHATLQ9HCP6 504 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 DUSP22Q9NRW4 184 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 GIN1Q9NXP7 522 aa13.81□□□□□ -0.2
LIMS3-201ENST00000437679 GOLGA8QA0A0J9YX86 632 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms