RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FNDC9Q8TBE3 224 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 RNF138Q8WVD3 245 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 STARD4Q96DR4 205 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 WFIKKN1Q96NZ8 548 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 CCL19Q99731 98 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 PRRG4Q9BZD6 226 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 TBL1XR1Q9BZK7 514 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 SHCBP1LQ9BZQ2 653 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 KLHL4Q9C0H6 718 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 GLIPR2Q9H4G4 154 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 MRTO4Q9UKD2 239 aaKnown RBP13.09□□□□□ -0.31
SDC1-204ENST00000429035 PROCRQ9UNN8 238 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 ABCG2Q9UNQ0 655 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 MRPS18CQ9Y3D5 142 aaKnown RBP13.09□□□□□ -0.31
SDC1-204ENST00000429035 A0A087WV62 115 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 OR2M5A3KFT3 312 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 MYO1GB0I1T2 1018 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 UPK1AO00322 258 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 ARHGEF9O43307 516 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 CTIFO43310 598 aaKnown RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 UTS2O95399 124 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 CRHP06850 196 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 HOXC12P31275 282 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 SUCLG1P53597 346 aaKnown RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 PSMD4P55036 377 aaKnown RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 CLDN20P56880 219 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 RPS3AP61247 264 aaKnown RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 BCL2A1Q16548 175 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 CYP27C1Q4G0S4 372 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 GLE1Q53GS7 698 aaKnown RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 CFAP157Q5JU67 520 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 SHEQ5VZ18 495 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 FAM71E1Q6IPT2 247 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 GALNT18Q6P9A2 607 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 ZNF474Q6S9Z5 364 aaPredicted RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 GALNT10Q86SR1 603 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 LCA5Q86VQ0 697 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 KRTAP1-3Q8IUG1 177 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 GATSQ8NAP1 163 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 DUSP19Q8WTR2 217 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 GFM2Q969S9 779 aaKnown RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 C1GALT1C1Q96EU7 318 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 PERPQ96FX8 193 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 PIGQQ9BRB3 760 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 SLC39A3Q9BRY0 314 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 RTN4RQ9BZR6 473 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 MYNNQ9NPC7 610 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 FAM120CQ9NX05 1096 aaKnown RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 GRID1Q9ULK0 1009 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 C19orf53Q9UNZ5 99 aaPredicted RBP13.08□□□□□ -0.32
SDC1-204ENST00000429035 VDAC3Q9Y277 283 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 FIS1Q9Y3D6 152 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 ZNF337Q9Y3M9 751 aa13.08□□□□□ -0.32
SDC1-204ENST00000429035 GXYLT2A0PJZ3 443 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 UBFD1O14562 309 aaKnown RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 EIF1AYO14602 144 aaKnown RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 PDPK1O15530 556 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 SIAH2O43255 324 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 GLRA3O75311 464 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 SLITRK5O94991 958 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 KCNH1O95259 989 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 PLGP00747 810 aaPredicted RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 GABRA3P34903 492 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 KIR2DL2P43627 348 aaPredicted RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 EIF1AXP47813 144 aaKnown RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 PRKAG1P54619 331 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 ANKRD34AQ69YU3 496 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 ANKRD26P1Q6NSI1 321 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 ZYG11AQ6WRX3 759 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 TRMT10CQ7L0Y3 403 aaKnown RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 CXorf67Q86X51 503 aaPredicted RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 GSPT2Q8IYD1 628 aaKnown RBP13.07□□□□□ -0.32
SDC1-204ENST00000429035 CEP112Q8N8E3 955 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 ACMSDQ8TDX5 336 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 PIK3R3Q92569 461 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 SLC9A6Q92581 669 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 C3orf14Q9HBI5 128 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 CLEC4AQ9UMR7 237 aa13.07□□□□□ -0.32
SDC1-204ENST00000429035 SMIM23A6NLE4 172 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 DEFB108AA8MXU0 73 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 SMAD7O15105 426 aaKnown RBP13.06□□□□□ -0.32
SDC1-204ENST00000429035 FADS1O60427 444 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 RSL1D1O76021 490 aaKnown RBP13.06□□□□□ -0.32
SDC1-204ENST00000429035 IL33O95760 270 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 ANGPTL1O95841 491 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 FCGR2AP12318 317 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 CRYGSP22914 178 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 UGT2B10P36537 528 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 CLDN15P56746 228 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 GRAMD1BQ3KR37 738 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 NOXRED1Q6NXP6 359 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 FRMD7Q6ZUT3 714 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 ZNF551Q7Z340 670 aaPredicted RBP13.06□□□□□ -0.32
SDC1-204ENST00000429035 OR2L13Q8N349 312 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 ZNF610Q8N9Z0 462 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 GPR151Q8TDV0 419 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 PIGTQ969N2 578 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 CIDECQ96AQ7 238 aaPredicted RBP13.06□□□□□ -0.32
SDC1-204ENST00000429035 ELP4Q96EB1 424 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 CCDC126Q96EE4 140 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms