RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 NBPF19A0A087WUL8 3843 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 A0A0G2JNJ9 132 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 KDM4EB2RXH2 506 aaPredicted RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 SDHDO14521 159 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 CFLARO15519 480 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 HNRNPRO43390 633 aaKnown RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 UTS2O95399 124 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 HMGN2P05204 90 aaKnown RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 SNRPB2P08579 225 aaKnown RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 ALOX5P09917 674 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 KITP10721 976 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 LBPP18428 481 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 TCEA1P23193 301 aaKnown RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 CHRNB4P30926 498 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 SRD5A2P31213 254 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 ADH7P40394 386 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 PRIM2P49643 509 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 STX5Q13190 355 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 TP53BP2Q13625 1128 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 LASP1Q14847 261 aaKnown RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 GRAMD1BQ3KR37 738 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 ATG16L1Q676U5 607 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 OR4F3Q6IEY1 312 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 ZCCHC12Q6PEW1 402 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 FIGNL1Q6PIW4 674 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 CAMKMTQ7Z624 323 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 MARCH3Q86UD3 253 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 LILRB4Q8NHJ6 448 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 PSMA8Q8TAA3 256 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 RAB3IL1Q8TBN0 382 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 MARVELD3Q96A59 401 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 CHMP6Q96FZ7 201 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 UCK2Q9BZX2 261 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 DPY30Q9C005 99 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 PRDM14Q9GZV8 571 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 DSN1Q9H410 356 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 SDHAF3Q9NRP4 125 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 FBXO34Q9NWN3 711 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 FAM120CQ9NX05 1096 aaKnown RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 TAS2R10Q9NYW0 307 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 MARCOQ9UEW3 520 aaPredicted RBP13.47□□□□□ -0.25
LIMS4-201ENST00000413601 Q9UFV3 132 aa13.47□□□□□ -0.25
LIMS4-201ENST00000413601 NKX2-6A6NCS4 301 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 FAM90A27PA6NNH2 459 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 AHRRA9YTQ3 701 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 KCNK2O95069 426 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 ACTL6AO96019 429 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 DPP4P27487 766 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 KIR3DL1P43629 444 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 CLK3P49761 638 aaKnown RBP13.46□□□□□ -0.25
LIMS4-201ENST00000413601 WNT3P56703 355 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 HBA1P69905 142 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 SPDYE7PQ495Y7 208 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 EXOSC6Q5RKV6 272 aaKnown RBP13.46□□□□□ -0.25
LIMS4-201ENST00000413601 APOOLQ6UXV4 268 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 ZAR1Q86SH2 424 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 IFNEQ86WN2 208 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 WDR75Q8IWA0 830 aaKnown RBP13.46□□□□□ -0.25
LIMS4-201ENST00000413601 TRIM42Q8IWZ5 723 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 PM20D2Q8IYS1 436 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 CLECL1Q8IZS7 167 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 COX18Q8N8Q8 333 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 OR4K17Q8NGC6 315 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 OR5AK3PQ8NH89 298 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 FAM110BQ8TC76 370 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 DUSP19Q8WTR2 217 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 WDYHV1Q96HA8 205 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 TBL1XR1Q9BZK7 514 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 WDR55Q9H6Y2 383 aaPredicted RBP13.46□□□□□ -0.25
LIMS4-201ENST00000413601 MED11Q9P086 117 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 DKKL1Q9UK85 242 aa13.46□□□□□ -0.25
LIMS4-201ENST00000413601 MED12LQ86YW9 2145 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 GOLGA8QA0A0J9YX86 632 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 GOLGA8OA6NCC3 632 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 GOLGA8NF8WBI6 632 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 ANKRD28O15084 1053 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 HDAC3O15379 428 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 ZIC3O60481 467 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 EPPINO95925 133 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 ALDOCP09972 364 aaKnown RBP13.45□□□□□ -0.26
LIMS4-201ENST00000413601 EPHA3P29320 983 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 PTGER4P35408 488 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 GCKP35557 465 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 ZFP36L2P47974 494 aaKnown RBP13.45□□□□□ -0.26
LIMS4-201ENST00000413601 GFRA1P56159 465 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 OCRLQ01968 901 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 ACSF3Q4G176 576 aaPredicted RBP13.45□□□□□ -0.26
LIMS4-201ENST00000413601 CCNJQ5T5M9 372 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 OGFOD2Q6N063 350 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 SEM1Q6ZVN7 128 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 LRRC34Q8IZ02 419 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 FADS6Q8N9I5 356 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 OR2M3Q8NG83 312 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 OR56A1Q8NGH5 318 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 OR4C3Q8NH37 302 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 SFXN5Q8TD22 340 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 CDS1Q92903 461 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 ATP6V1G3Q96LB4 118 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 BTBD2Q9BX70 525 aa13.45□□□□□ -0.26
LIMS4-201ENST00000413601 ACTRT3Q9BYD9 372 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms