RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SLC13A4Q9UKG4 626 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 CBLCQ9ULV8 474 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 IGHV3-20A0A0C4DH32 117 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 PMS2P1A4D2B8 440 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 PCDH17O14917 1159 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 CLIC3O95833 236 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 DBIP07108 87 aaKnown RBP13.02□□□□□ -0.33
GPNMB-203ENST00000409458 IL7RP16871 459 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 PIGAP37287 484 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 FOXD4Q12950 439 aaPredicted RBP13.02□□□□□ -0.33
GPNMB-203ENST00000409458 ILKQ13418 452 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 PIN1Q13526 163 aaPredicted RBP13.02□□□□□ -0.33
GPNMB-203ENST00000409458 LARS2Q15031 903 aaKnown RBP13.02□□□□□ -0.33
GPNMB-203ENST00000409458 COLEC12Q5KU26 742 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 SWT1Q5T5J6 900 aaKnown RBP13.02□□□□□ -0.33
GPNMB-203ENST00000409458 CDCP2Q5VXM1 449 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 FAHD1Q6P587 224 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 ISLR2Q6UXK2 745 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 ANKRD37Q7Z713 158 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 C9orf40Q8IXQ3 194 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 AMER2Q8N7J2 671 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 BCORP1Q8N888 145 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 GIPC3Q8TF64 312 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 PHF10Q8WUB8 498 aaKnown RBP13.02□□□□□ -0.33
GPNMB-203ENST00000409458 FKBP10Q96AY3 582 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 LMF1Q96S06 567 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 CDC6Q99741 560 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 ULBP3Q9BZM4 244 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 SLC26A1Q9H2B4 701 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 NMNAT1Q9HAN9 279 aaPredicted RBP13.02□□□□□ -0.33
GPNMB-203ENST00000409458 TOR4AQ9NXH8 423 aa13.02□□□□□ -0.33
GPNMB-203ENST00000409458 WDFY3Q8IZQ1 3526 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 TRBV4-1A0A0J9YWV2 114 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 TEX51A0A1B0GUA7 166 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 SYNDIG1LA6NDD5 238 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 TTC36A6NLP5 189 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 TPST2O60704 377 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 ALOX12BO75342 701 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 GUSBP08236 651 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 NID1P14543 1247 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 AGXTP21549 392 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 TGM1P22735 817 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 ELAVL4P26378 380 aaKnown RBP13.01□□□□□ -0.33
GPNMB-203ENST00000409458 HMGA2P52926 109 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 HOXC5Q00444 222 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 E2F1Q01094 437 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 KCNAB2Q13303 367 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 MICAQ29983 383 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 EIPR1Q53HC9 387 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 AP1ARQ63HQ0 302 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 MRPL14Q6P1L8 145 aaKnown RBP13.01□□□□□ -0.33
GPNMB-203ENST00000409458 FAM199XQ6PEV8 388 aaPredicted RBP13.01□□□□□ -0.33
GPNMB-203ENST00000409458 FAM198BQ6UWH4 519 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 GALNT5Q7Z7M9 940 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 OFCC1Q8IZS5 231 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 ATG16L2Q8NAA4 619 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 OR9Q2Q8NGE9 314 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 OR1N1Q8NGS0 311 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 ART5Q96L15 291 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 PRRC1Q96M27 445 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 LRFN5Q96NI6 719 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 LRFN3Q9BTN0 628 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 STRADBQ9C0K7 418 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 CTPS2Q9NRF8 586 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 KLHL28Q9NXS3 571 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 AKAP7Q9P0M2 348 aaPredicted RBP13.01□□□□□ -0.33
GPNMB-203ENST00000409458 C3orf18Q9UK00 162 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 ZNF232Q9UNY5 417 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 OR10H1Q9Y4A9 318 aa13.01□□□□□ -0.33
GPNMB-203ENST00000409458 H0YAE9 185 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 BCAS1O75363 584 aaPredicted RBP13□□□□□ -0.33
GPNMB-203ENST00000409458 CCNB2O95067 398 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 H1F0P07305 194 aaKnown RBP13□□□□□ -0.33
GPNMB-203ENST00000409458 LYNP07948 512 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 MYF6P23409 242 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 SLC5A2P31639 672 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 CHN2P52757 468 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 EMP2P54851 167 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 RGS8P57771 180 aaPredicted RBP13□□□□□ -0.33
GPNMB-203ENST00000409458 IL1RL1Q01638 556 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 PLAURQ03405 335 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 EPS8Q12929 822 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 EBPQ15125 230 aaKnown RBP13□□□□□ -0.33
GPNMB-203ENST00000409458 ISXQ2M1V0 245 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 FGD3Q5JSP0 725 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 PDZK1Q5T2W1 519 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 MRPL2Q5T653 305 aaKnown RBP13□□□□□ -0.33
GPNMB-203ENST00000409458 RNF220Q5VTB9 566 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 USP51Q70EK9 711 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 TAGAPQ8N103 731 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 SLC5A8Q8N695 610 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 MORN4Q8NDC4 146 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 PIK3C3Q8NEB9 887 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 PMM1Q92871 262 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 ADIPOR1Q96A54 375 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 ALPK1Q96QP1 1244 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 GAL3ST4Q96RP7 486 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 PRR14Q9BWN1 585 aa13□□□□□ -0.33
GPNMB-203ENST00000409458 NXF5Q9H1B4 397 aaKnown RBP13□□□□□ -0.33
GPNMB-203ENST00000409458 MAN2C1Q9NTJ4 1040 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms