RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PRKYO43930 277 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 HCN1O60741 890 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF432O94892 652 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 GYPBP06028 91 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 CTRB1P17538 263 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 WNT3P56703 355 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 PSMA6P60900 246 aaKnown RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 INSL4Q14641 139 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 CYB5R2Q6BCY4 276 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 CTRB2Q6GPI1 263 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 PSRC1Q6PGN9 363 aaPredicted RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 KANSL1Q7Z3B3 1105 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 GRASPQ7Z6J2 395 aaPredicted RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 KLHDC8BQ8IXV7 354 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 OR6K6Q8NGW6 343 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 MOSPD2Q8NHP6 518 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 SLC7A13Q8TCU3 470 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 HMGB4Q8WW32 186 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 TCTEX1D2Q8WW35 142 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 FATE1Q969F0 183 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 C7orf34Q96L11 122 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 S100A13Q99584 98 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 SPNS1Q9H2V7 528 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 MED20Q9H944 212 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 C12orf10Q9HB07 376 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 OR1A2Q9Y585 309 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 OTOFQ9HC10 1997 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF821O75541 412 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 ENPP1P22413 925 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 AHRP35869 848 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NUDT1P36639 197 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 GIPRP48546 466 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 VEGFBP49765 207 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CLINT1Q14677 625 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 ALKBH2Q6NS38 261 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TMEM17Q86X19 198 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 MCHR1Q99705 422 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TREX2Q9BQ50 279 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF350Q9GZX5 532 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 C3orf14Q9HBI5 128 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 GPN1Q9HCN4 374 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 PCDHGA2Q9Y5H1 932 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 RNASET2O00584 256 aaKnown RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 LY86O95711 162 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 HLA-DPB1P04440 258 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 RPN2P04844 631 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NR2C1P13056 603 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NT5EP21589 574 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CCR8P51685 355 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 METTL11BQ5VVY1 283 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 PLBD1Q6P4A8 553 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CNKSR3Q6P9H4 555 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 KLHL36Q8N4N3 616 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NXPE2Q96DL1 559 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TXNL4BQ9NX01 149 aaKnown RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TEX10Q9NXF1 929 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TAS2R7Q9NYW3 318 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 ATXN7L1Q9ULK2 861 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 AKAP8O43823 692 aaKnown RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 FZD6O60353 706 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 ADAP00813 363 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 ALPPP05187 535 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 PSMD4P55036 377 aaKnown RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 BTN3A2P78410 334 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CREB3L2Q70SY1 520 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CXXC5Q7LFL8 322 aaKnown RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NRMQ8IXM6 262 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TTLQ8NG68 377 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 SMAP2Q8WU79 429 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 ADAMTS14Q8WXS8 1223 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 RGMAQ96B86 450 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 C16orf58Q96GQ5 468 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 WDR77Q9BQA1 342 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CCDC32Q9BV29 185 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 MVB12BQ9H7P6 319 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 SH2B3Q9UQQ2 575 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NPIPA5A0A0B4J1W7 369 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NPIPA7E9PJI5 369 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 GAPDHSO14556 408 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 LYRM1O43325 122 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 RPP14O95059 124 aaKnown RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 NPIPA8P0DM63 369 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 PYCR1P32322 319 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 BMPR1AP36894 532 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 MAPK9P45984 424 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 GCGRP47871 477 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CLDN2P57739 230 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 EIF4HQ15056 248 aaKnown RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 GRK1Q15835 563 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 SLCO4C1Q6ZQN7 724 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 LINGO2Q7L985 606 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CPOQ8IVL8 374 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 UBQLNLQ8IYU4 475 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CBARPQ8N350 705 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 C12orf76Q8N812 135 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TMEM185AQ8NFB2 350 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 OR2A12Q8NGT7 310 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 SAP130Q9H0E3 1048 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 TM7SF3Q9NS93 570 aa11.24□□□□□ -0.61
HMGB1-206ENST00000405805 CBY1Q9Y3M2 126 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms