RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ZFHX4Q86UP3 3567 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 TRBV11-1A0A0K0K1C0 115 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 AGAP5A6NIR3 686 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 BRINP1O60477 761 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 REM1O75628 298 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 AK1P00568 194 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 SEMG1P04279 462 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 UMODP07911 640 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 CDK4P11802 303 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 HPGDP15428 266 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF26P17031 533 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 OTX2P32243 289 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 TRHRP34981 398 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 PIGAP37287 484 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 FOLR3P41439 243 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ST13P50502 369 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 ARHGDIAP52565 204 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PIN1Q13526 163 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 EBPQ15125 230 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 DECR1Q16698 335 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 BTBD16Q32M84 506 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PDZK1Q5T2W1 519 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PRAMEF8Q5VWM4 474 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PRAMEF7Q5VXH5 474 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 HSDL2Q6YN16 418 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 TMEM179BQ7Z7N9 219 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 LSRQ86X29 649 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 TAGAPQ8N103 731 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 MORN4Q8NDC4 146 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 CHDHQ8NE62 594 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 C7orf57Q8NEG2 295 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 OR4D11Q8NGI4 311 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 OR6T1Q8NGN1 323 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 OR5M3Q8NGP4 307 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 RNF217Q8TC41 542 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 LCORQ96JN0 433 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF300Q96RE9 604 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 ADOQ96SZ5 270 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 WDR54Q9H977 334 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 KLHL28Q9NXS3 571 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF443Q9Y2A4 671 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 PADI2Q9Y2J8 665 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 C15orf41Q9Y2V0 281 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 IFT52Q9Y366 437 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ACACAQ13085 2346 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 DSPPQ9NZW4 1301 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 SAGE2PA6NJ88 616 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 MASP2O00187 686 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 TNFRSF11BO00300 401 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 WWP2O00308 870 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 KIAA0513O60268 411 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 UGT2B17O75795 530 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 EPPINO95925 133 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ONECUT2O95948 504 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 DBIP07108 87 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 IFI6P09912 130 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 GKN3PP0CG01 181 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 HOXB6P17509 224 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 FUT4P22083 530 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 KRT20P35900 424 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 DCTP40126 519 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PPICP45877 212 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 RGS8P57771 180 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 RPS15P62841 145 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 GABREP78334 506 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 NHLH1Q02575 133 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZIK1Q3SY52 487 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 FGD3Q5JSP0 725 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 EXOSC6Q5RKV6 272 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 C6orf52Q5T4I8 152 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ANKRD34AQ69YU3 496 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 DESI1Q6ICB0 168 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF517Q6ZMY9 492 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF836Q6ZNA1 936 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PIWIL3Q7Z3Z3 882 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 TSEN54Q7Z6J9 526 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 GATSQ8NAP1 163 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 APCDD1LQ8NCL9 501 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 OR2Y1Q8NGV0 311 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PHF10Q8WUB8 498 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 CT55Q8WUE5 264 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 BTBD9Q96Q07 612 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF347Q96SE7 839 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 BARD1Q99728 777 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 WDR77Q9BQA1 342 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 G6PC3Q9BUM1 346 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PINK1Q9BXM7 581 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 WWTR1Q9GZV5 400 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 SMURF2Q9HAU4 748 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZBTB20Q9HC78 741 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 PDP1Q9P0J1 537 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 KCNE5Q9UJ90 142 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ENPP4Q9Y6X5 453 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PRRC2CQ9Y520 2896 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 C7orf72A4D263 438 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CPSF4LA6NMK7 179 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 ADAMDEC1O15204 470 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ACOX3O15254 700 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 PEX1O43933 1283 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 GMFGO60234 142 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms