RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KCNK2O95069 426 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 CLPSP04118 112 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 IL7RP16871 459 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 F8A1P23610 371 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 PIGAP37287 484 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 CLK3P49761 638 aaKnown RBP13.14□□□□□ -0.31
SKA1-202ENST00000398452 ERFP50548 548 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 GPR143P51810 404 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 RRADP55042 308 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 RHDQ02161 417 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 FLYWCH1Q4VC44 716 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 CYBRD1Q53TN4 286 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 CRB2Q5IJ48 1285 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 EIF3MQ7L2H7 374 aaKnown RBP13.14□□□□□ -0.31
SKA1-202ENST00000398452 SLC34A3Q8N130 599 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 ZNF614Q8N883 585 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 ZNF527Q8NB42 609 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 CLEC1AQ8NC01 280 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 THAP3Q8WTV1 239 aaPredicted RBP13.14□□□□□ -0.31
SKA1-202ENST00000398452 THAP4Q8WY91 577 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 HOXB13Q92826 284 aaPredicted RBP13.14□□□□□ -0.31
SKA1-202ENST00000398452 NAF1Q96HR8 494 aaKnown RBP13.14□□□□□ -0.31
SKA1-202ENST00000398452 IMMP1LQ96LU5 166 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 SEPHS2Q99611 448 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 NXF5Q9H1B4 397 aaKnown RBP13.14□□□□□ -0.31
SKA1-202ENST00000398452 ATP13A2Q9NQ11 1180 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 DCAF13Q9NV06 445 aaKnown RBP13.14□□□□□ -0.31
SKA1-202ENST00000398452 OLAHQ9NV23 265 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 ABI3Q9P2A4 366 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 IL17BQ9UHF5 180 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 TEKT2Q9UIF3 430 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 DTX4Q9Y2E6 619 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 KCNE3Q9Y6H6 103 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 V9GYQ6 96 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 CELSR3Q9NYQ7 3312 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 ZNF891A8MT65 544 aaPredicted RBP13.13□□□□□ -0.31
SKA1-202ENST00000398452 TO15178 435 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 TLX3O43711 291 aaPredicted RBP13.13□□□□□ -0.31
SKA1-202ENST00000398452 ENTPD5O75356 428 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 OPN1SWP03999 348 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 DBIP07108 87 aaKnown RBP13.13□□□□□ -0.31
SKA1-202ENST00000398452 CHRM4P08173 479 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 CT45A8P0DMV1 189 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 CT45A9P0DMV2 189 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 LCN1P31025 176 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 EIF2S3P41091 472 aaKnown RBP13.13□□□□□ -0.31
SKA1-202ENST00000398452 MAP3K8P41279 467 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 RPP38P78345 283 aaKnown RBP13.13□□□□□ -0.31
SKA1-202ENST00000398452 CHRNEQ04844 493 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 IL10RAQ13651 578 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 ATP1A4Q13733 1029 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 CCNIQ14094 377 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 LIN52Q52LA3 116 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 EIPR1Q53HC9 387 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 CT45A2Q5DJT8 189 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 ZNF311Q5JNZ3 666 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 TBCELQ5QJ74 424 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 EXOSC6Q5RKV6 272 aaKnown RBP13.13□□□□□ -0.31
SKA1-202ENST00000398452 CCNJQ5T5M9 372 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 AAGABQ6PD74 315 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 NPSR1Q6W5P4 371 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 CBLL1Q75N03 491 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 VASH2Q86V25 355 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 BCORP1Q8N888 145 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 ELP5Q8TE02 316 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 ADIPOR1Q96A54 375 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 SLC47A1Q96FL8 570 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 PYURFQ96I23 114 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 ZNF350Q9GZX5 532 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 DKK4Q9UBT3 224 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 MKLN1Q9UL63 735 aa13.13□□□□□ -0.31
SKA1-202ENST00000398452 BAHCC1Q9P281 2608 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 TCRBV3S1A0A5B6 114 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 H3BNH8 94 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 WWP2O00308 870 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 SCDO00767 359 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 SERPINA7P05543 415 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 C8BP07358 591 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 GUSBP08236 651 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 PCBP3P57721 371 aaKnown RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 SELENOWP63302 87 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 AIMP2Q13155 320 aaKnown RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 EFR3AQ14156 821 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.12□□□□□ -0.31
SKA1-202ENST00000398452 ZSWIM7Q19AV6 140 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 IFI44LQ53G44 452 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 SOWAHCQ53LP3 525 aaPredicted RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 TYW3Q6IPR3 259 aaKnown RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 JMJD6Q6NYC1 403 aaPredicted RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 SLC15A4Q8N697 577 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 TMEM102Q8N9M5 508 aaPredicted RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 SMYD1Q8NB12 490 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 OR4N2Q8NGD1 307 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 OR52P1PQ8NH57 321 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 OIT3Q8WWZ8 545 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 DIO2Q92813 273 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 TMBIM1Q969X1 311 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 EFHD2Q96C19 240 aaPredicted RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 OMA1Q96E52 524 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 HSH2DQ96JZ2 352 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms