RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 FLRT3Q9NZU0 649 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 DCTN4Q9UJW0 460 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 LIPGQ9Y5X9 500 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 NUP214P35658 2090 aaPredicted RBP19.82■□□□□ 0.76
CLN3-207ENST00000395653 C2orf72A6NCS6 295 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 DUXAA6NLW8 204 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 UTS2O95399 124 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 HPNP05981 417 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 NGFRP08138 427 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 MATN1P21941 496 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 CLK3P49761 638 aaKnown RBP19.82■□□□□ 0.76
CLN3-207ENST00000395653 ATP4BP51164 291 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 SAXO2Q658L1 398 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 PLCZ1Q86YW0 608 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 RFWD2Q8NHY2 731 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 NEURL3Q96EH8 262 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 SERHL2Q9H4I8 314 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 LDAHQ9H6V9 325 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 SERHLQ9NQF3 203 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 TMEM45AQ9NWC5 275 aa19.82■□□□□ 0.76
CLN3-207ENST00000395653 TRGV5A0A0B4J1U4 118 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 OR14I1A6ND48 311 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 CCDC154A6NI56 674 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 AQP7O14520 342 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 PRRG2O14669 202 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 ADAM10O14672 748 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 CBR3O75828 277 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 MDH1P40925 334 aaKnown RBP19.81■□□□□ 0.76
CLN3-207ENST00000395653 RPS26P62854 115 aaKnown RBP19.81■□□□□ 0.76
CLN3-207ENST00000395653 C3AR1Q16581 482 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 GRAMD1BQ3KR37 738 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 DCST2Q5T1A1 773 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 OR5D16Q8NGK9 328 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 FAM57AQ8TBR7 257 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 DTNBP1Q96EV8 351 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 SLC35A5Q9BS91 424 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 INPP5KQ9BT40 448 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 RMND5AQ9H871 391 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 SDHAF3Q9NRP4 125 aa19.81■□□□□ 0.76
CLN3-207ENST00000395653 A0A0G2JND7 137 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 RFXANKO14593 260 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 ZNHIT1O43257 154 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 SCO2O43819 266 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 TROVE2P10155 538 aaKnown RBP eCLIP19.8■□□□□ 0.76
CLN3-207ENST00000395653 TBXA2RP21731 343 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 CHI3L1P36222 383 aaPredicted RBP19.8■□□□□ 0.76
CLN3-207ENST00000395653 CDKN2CP42773 168 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 RCAN2Q14206 197 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 SQLEQ14534 574 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 TIGD2Q4W5G0 525 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 CCNJQ5T5M9 372 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 ZAR1Q86SH2 424 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 FGFR1OP2Q9NVK5 253 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 FBXO34Q9NWN3 711 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 TINAGQ9UJW2 476 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 TRIM33Q9UPN9 1127 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 HRH3Q9Y5N1 445 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 KCNE3Q9Y6H6 103 aa19.8■□□□□ 0.76
CLN3-207ENST00000395653 NCKAP5O14513 1909 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 DYNC1I1O14576 645 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 TRAPPC6AO75865 159 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 OXSR1O95747 527 aaPredicted RBP19.79■□□□□ 0.76
CLN3-207ENST00000395653 AGR2O95994 175 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 AK1P00568 194 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 TPOP07202 933 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 VIMP08670 466 aaKnown RBP19.79■□□□□ 0.76
CLN3-207ENST00000395653 ATP6V1C1P21283 382 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 PER3P56645 1201 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 ZNF621Q6ZSS3 439 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 GALNT10Q86SR1 603 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 FJX1Q86VR8 437 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 FUNDC1Q8IVP5 155 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 NEIL3Q8TAT5 605 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 SSC4DQ8WTU2 575 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 VPS33AQ96AX1 596 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 ITCHQ96J02 903 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 TBL1XR1Q9BZK7 514 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 SLC6A15Q9H2J7 730 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 RABEP2Q9H5N1 569 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 EXO5Q9H790 373 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 HHATLQ9HCP6 504 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 UBQLN4Q9NRR5 601 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 PPP4R1LQ9P1A2 415 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 SH3BGRL2Q9UJC5 107 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 ZNF407Q9C0G0 2248 aa19.79■□□□□ 0.76
CLN3-207ENST00000395653 ALG1L2C9J202 215 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 BCKDKO14874 412 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 LDLRP01130 860 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 ZCCHC18P0CG32 403 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 ENDOUP21128 410 aaKnown RBP19.78■□□□□ 0.76
CLN3-207ENST00000395653 TOMM20Q15388 145 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 METTL21CQ5VZV1 264 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 BLOC1S3Q6QNY0 202 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 MARCH3Q86UD3 253 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 CD163Q86VB7 1156 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 DOLPP1Q86YN1 238 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 CHDHQ8NE62 594 aaPredicted RBP19.78■□□□□ 0.76
CLN3-207ENST00000395653 OR4C3Q8NH37 302 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 SARAFQ96BY9 339 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 RTN4RQ9BZR6 473 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms