RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 SIX6O95475 246 aa13□□□□□ -0.33
SDC1-202ENST00000381150 CTSLP07711 333 aa13□□□□□ -0.33
SDC1-202ENST00000381150 H2AFB2P0C5Z0 115 aa13□□□□□ -0.33
SDC1-202ENST00000381150 PAICSP22234 425 aaKnown RBP13□□□□□ -0.33
SDC1-202ENST00000381150 SLC6A1P30531 599 aa13□□□□□ -0.33
SDC1-202ENST00000381150 FNTBP49356 437 aa13□□□□□ -0.33
SDC1-202ENST00000381150 CLCNKAP51800 687 aa13□□□□□ -0.33
SDC1-202ENST00000381150 BLVRAP53004 296 aa13□□□□□ -0.33
SDC1-202ENST00000381150 ST3GAL2Q16842 350 aa13□□□□□ -0.33
SDC1-202ENST00000381150 GPR139Q6DWJ6 353 aa13□□□□□ -0.33
SDC1-202ENST00000381150 BBS1Q8NFJ9 593 aa13□□□□□ -0.33
SDC1-202ENST00000381150 GPR32P1Q8NGA4 272 aa13□□□□□ -0.33
SDC1-202ENST00000381150 ZNF671Q8TAW3 534 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SORCS1Q8WY21 1168 aa13□□□□□ -0.33
SDC1-202ENST00000381150 MARC2Q969Z3 335 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SFXN2Q96NB2 322 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SLC38A2Q96QD8 506 aa13□□□□□ -0.33
SDC1-202ENST00000381150 MCOLN1Q9GZU1 580 aa13□□□□□ -0.33
SDC1-202ENST00000381150 RNF32Q9H0A6 362 aa13□□□□□ -0.33
SDC1-202ENST00000381150 ISG20L2Q9H9L3 353 aaKnown RBP13□□□□□ -0.33
SDC1-202ENST00000381150 EQTNQ9NQ60 294 aa13□□□□□ -0.33
SDC1-202ENST00000381150 TSPAN11A1L157 253 aa13□□□□□ -0.33
SDC1-202ENST00000381150 PGRMC2O15173 223 aa13□□□□□ -0.33
SDC1-202ENST00000381150 HYAL3O43820 417 aaPredicted RBP13□□□□□ -0.33
SDC1-202ENST00000381150 PIP5K1CO60331 668 aa13□□□□□ -0.33
SDC1-202ENST00000381150 LEFTY1O75610 366 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SLC2A10O95528 541 aa13□□□□□ -0.33
SDC1-202ENST00000381150 LGI1O95970 557 aa13□□□□□ -0.33
SDC1-202ENST00000381150 TIMP2P16035 220 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SLC1A3P43003 542 aa13□□□□□ -0.33
SDC1-202ENST00000381150 PITPNBP48739 271 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SP140Q13342 867 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SNTB2Q13425 540 aaKnown RBP13□□□□□ -0.33
SDC1-202ENST00000381150 LY6G5CQ5SRR4 150 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SFRP5Q5T4F7 317 aa13□□□□□ -0.33
SDC1-202ENST00000381150 HENMT1Q5T8I9 393 aaKnown RBP13□□□□□ -0.33
SDC1-202ENST00000381150 FAM181AQ8N9Y4 354 aa13□□□□□ -0.33
SDC1-202ENST00000381150 OR10H4Q8NGA5 316 aa13□□□□□ -0.33
SDC1-202ENST00000381150 KIAA1143Q96AT1 154 aaPredicted RBP13□□□□□ -0.33
SDC1-202ENST00000381150 FAM46AQ96IP4 442 aaKnown RBP13□□□□□ -0.33
SDC1-202ENST00000381150 FCRL1Q96LA6 429 aa13□□□□□ -0.33
SDC1-202ENST00000381150 ZSWIM3Q96MP5 696 aa13□□□□□ -0.33
SDC1-202ENST00000381150 KCNN2Q9H2S1 579 aa13□□□□□ -0.33
SDC1-202ENST00000381150 FAAHO00519 579 aa13□□□□□ -0.33
SDC1-202ENST00000381150 KIAA0355O15063 1070 aa13□□□□□ -0.33
SDC1-202ENST00000381150 LIMS3P0CW19 117 aa13□□□□□ -0.33
SDC1-202ENST00000381150 LIMS4P0CW20 117 aa13□□□□□ -0.33
SDC1-202ENST00000381150 TFPIP10646 304 aa13□□□□□ -0.33
SDC1-202ENST00000381150 SLC6A11P48066 632 aa13□□□□□ -0.33
SDC1-202ENST00000381150 ERVK-21P61565 698 aa13□□□□□ -0.33
SDC1-202ENST00000381150 DGCR2P98153 550 aa13□□□□□ -0.33
SDC1-202ENST00000381150 ZNF77Q15935 545 aa13□□□□□ -0.33
SDC1-202ENST00000381150 LIPJQ5W064 366 aa13□□□□□ -0.33
SDC1-202ENST00000381150 OR8D4Q8NGM9 314 aa13□□□□□ -0.33
SDC1-202ENST00000381150 TRMT10AQ8TBZ6 339 aaKnown RBP13□□□□□ -0.33
SDC1-202ENST00000381150 TOE1Q96GM8 510 aaKnown RBP13□□□□□ -0.33
SDC1-202ENST00000381150 MED20Q9H944 212 aa13□□□□□ -0.33
SDC1-202ENST00000381150 FBXL2Q9UKC9 423 aa13□□□□□ -0.33
SDC1-202ENST00000381150 HRH3Q9Y5N1 445 aa13□□□□□ -0.33
SDC1-202ENST00000381150 GPR171O14626 319 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 PPM1BO75688 479 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 HOXD4P09016 255 aaPredicted RBP12.99□□□□□ -0.33
SDC1-202ENST00000381150 RRASP10301 218 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 GPR4P46093 362 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 PXNP49023 591 aaPredicted RBP12.99□□□□□ -0.33
SDC1-202ENST00000381150 SELENOPP49908 381 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 TAS2R41P59536 307 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 MPEG1Q2M385 716 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 SPIN4Q56A73 249 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 SLC27A4Q6P1M0 643 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 SERPINA12Q8IW75 414 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 ZNF687Q8N1G0 1237 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 MRPL43Q8N983 215 aaKnown RBP12.99□□□□□ -0.33
SDC1-202ENST00000381150 RPLP0P6Q8NHW5 317 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 WDR20Q8TBZ3 569 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 C16orf78Q8WTQ4 265 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 OR51V1Q9H2C8 321 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 OSGEPL1Q9H4B0 414 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 MTG2Q9H4K7 406 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 DDX31Q9H8H2 851 aaKnown RBP12.99□□□□□ -0.33
SDC1-202ENST00000381150 NFKBIL1Q9UBC1 381 aaPredicted RBP12.99□□□□□ -0.33
SDC1-202ENST00000381150 ZNF69Q9UC07 566 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 SZT2Q5T011 3432 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 SLC9A3R1O14745 358 aaPredicted RBP12.99□□□□□ -0.33
SDC1-202ENST00000381150 ARPC5O15511 151 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 GPR37L1O60883 481 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 REM1O75628 298 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 HPXP02790 462 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 ARAFP10398 606 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 AP1S2P56377 157 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 ARSIQ5FYB1 569 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 ZNF770Q6IQ21 691 aaPredicted RBP12.99□□□□□ -0.33
SDC1-202ENST00000381150 FAAP20Q6NZ36 180 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 KRT78Q8N1N4 520 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 KLHL36Q8N4N3 616 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 CYB5D2Q8WUJ1 264 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 FUZQ9BT04 418 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 BRD7Q9NPI1 651 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 COPS3Q9UNS2 423 aa12.99□□□□□ -0.33
SDC1-202ENST00000381150 QSOX1O00391 747 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms