RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 ADAM10O14672 748 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 FAM107AO95990 144 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 TBXA2RP21731 343 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 MST1P26927 711 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 EVI2BP34910 448 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 RFX3P48380 749 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 ANXA11P50995 505 aaKnown RBP17.15■□□□□ 0.34
SSU72-203ENST00000378725 KCNJ2P63252 427 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 ALDH6A1Q02252 535 aaKnown RBP17.15■□□□□ 0.34
SSU72-203ENST00000378725 COQ5Q5HYK3 327 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 FNDC7Q5VTL7 733 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 PACS2Q86VP3 889 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 SIAH3Q8IW03 269 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 OR4C3Q8NH37 302 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 PNPT1Q8TCS8 783 aaKnown RBP17.15■□□□□ 0.34
SSU72-203ENST00000378725 RAB8BQ92930 207 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 AURKBQ96GD4 344 aaPredicted RBP17.15■□□□□ 0.34
SSU72-203ENST00000378725 SLX1AQ9BQ83 275 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 OSBPL11Q9BXB4 747 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 TTTY12Q9BZ98 90 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 OLAHQ9NV23 265 aa17.15■□□□□ 0.34
SSU72-203ENST00000378725 SMG1Q96Q15 3661 aaKnown RBP17.15■□□□□ 0.34
SSU72-203ENST00000378725 LOC100653049A0A140TA62 436 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 PRAMEF27A3QJZ7 478 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 LRRC3CA6NJW4 275 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 BBIP1A8MTZ0 92 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 KRT34O76011 436 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 RFC3P40938 356 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 TDGF1P3P51864 188 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 PPIAP62937 165 aaKnown RBP17.14■□□□□ 0.33
SSU72-203ENST00000378725 RGNQ15493 299 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 GRAMD1BQ3KR37 738 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 RUNDC3AQ59EK9 446 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.14■□□□□ 0.33
SSU72-203ENST00000378725 ATAD3BQ5T9A4 648 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 ANGPTL8Q6UXH0 198 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 BNC2Q6ZN30 1099 aaPredicted RBP17.14■□□□□ 0.33
SSU72-203ENST00000378725 GALNT10Q86SR1 603 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 ANKS4BQ8N8V4 417 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 RP9Q8TA86 221 aaKnown RBP17.14■□□□□ 0.33
SSU72-203ENST00000378725 HOXD1Q9GZZ0 328 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 GALNT9Q9HCQ5 603 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 UBQLN4Q9NRR5 601 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 KLRF1Q9NZS2 232 aa17.14■□□□□ 0.33
SSU72-203ENST00000378725 BOKQ9UMX3 212 aaPredicted RBP17.14■□□□□ 0.33
SSU72-203ENST00000378725 NUP214P35658 2090 aaPredicted RBP17.14■□□□□ 0.33
SSU72-203ENST00000378725 NPIPB9F8W1W9 429 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 SNPHO15079 494 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 KALRNO60229 2985 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 WISP2O76076 250 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 ZNF24P17028 368 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 ATP6V1C1P21283 382 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 PPIBP23284 216 aaKnown RBP17.13■□□□□ 0.33
SSU72-203ENST00000378725 FOXK1P85037 733 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 PLGLB1Q02325 96 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 FUT5Q11128 374 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 STX5Q13190 355 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 CYLC2Q14093 348 aaPredicted RBP17.13■□□□□ 0.33
SSU72-203ENST00000378725 TIGD3Q6B0B8 471 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 APOOLQ6UXV4 268 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 SLC22A16Q86VW1 577 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 SNX32Q86XE0 403 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 ZNF597Q96LX8 424 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 RTN4RQ9BZR6 473 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 ZNF350Q9GZX5 532 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 SAP130Q9H0E3 1048 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 RAD21L1Q9H4I0 556 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 POLE3Q9NRF9 147 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 THUMPD1Q9NXG2 353 aaKnown RBP17.13■□□□□ 0.33
SSU72-203ENST00000378725 LIPT1Q9Y234 373 aa17.13■□□□□ 0.33
SSU72-203ENST00000378725 C2orf72A6NCS6 295 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 ALG1L2C9J202 215 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 FCMRO60667 390 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 STX11O75558 287 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 OXSR1O95747 527 aaPredicted RBP17.12■□□□□ 0.33
SSU72-203ENST00000378725 NPPAP01160 153 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 RFPL3SP0C7P2 107 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 BMP2P12643 396 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 ETFAP13804 333 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 EDN3P14138 238 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 GPX2P18283 190 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 ELAVL4P26378 380 aaKnown RBP17.12■□□□□ 0.33
SSU72-203ENST00000378725 CRATP43155 626 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 CLK3P49761 638 aaKnown RBP17.12■□□□□ 0.33
SSU72-203ENST00000378725 FADDQ13158 208 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 NFYCQ13952 458 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 KRTCAP3Q53RY4 240 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 C16orf62Q7Z3J2 963 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 DHDDSQ86SQ9 333 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 TREML1Q86YW5 311 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 TMEM251Q8N6I4 163 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 WDSUB1Q8N9V3 476 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 OR1J4Q8NGS1 313 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 ROPN1LQ96C74 230 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 GPR137Q96N19 417 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 ANKRD27Q96NW4 1050 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 TRNT1Q96Q11 434 aaKnown RBP17.12■□□□□ 0.33
SSU72-203ENST00000378725 CGREF1Q99674 301 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 ZDHHC11Q9H8X9 412 aa17.12■□□□□ 0.33
SSU72-203ENST00000378725 SDHAF3Q9NRP4 125 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms