RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TRA2BP62995 288 aaKnown RBP13.34□□□□□ -0.27
HMGA1-203ENST00000374116 HSD11B2P80365 405 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 ABATP80404 500 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 ZFP69Q49AA0 526 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 YIF1BQ5BJH7 314 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 SAXO2Q658L1 398 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 REEP3Q6NUK4 255 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 GDPD3Q7L5L3 318 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 CCDC103Q8IW40 242 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 LSMEM1Q8N8F7 131 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 TTLQ8NG68 377 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 OR4C15Q8NGM1 316 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 KLHL6Q8WZ60 621 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 LGALS12Q96DT0 336 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 OR6C1Q96RD1 312 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 CD180Q99467 661 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 CMKLR1Q99788 373 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 DPYSL5Q9BPU6 564 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 MACROD1Q9BQ69 325 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 STRADBQ9C0K7 418 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 NEUROD4Q9HD90 331 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 STMN3Q9NZ72 180 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 CCDC59Q9P031 241 aaKnown RBP13.34□□□□□ -0.27
HMGA1-203ENST00000374116 SNX8Q9Y5X2 465 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 NCOR2Q9Y618 2525 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 LOC105369274A0A096LPK9 316 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 LOC102723532A0A0G2JNH3 316 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 LRIT2A6NDA9 550 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 CENPXA8MT69 81 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 B8ZZF3 427 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 APOA1P02647 267 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 PRKACBP22694 351 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 TGFBR2P37173 567 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 PCBP4P57723 403 aaKnown RBP13.34□□□□□ -0.27
HMGA1-203ENST00000374116 SPIBQ01892 262 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 MICAQ29983 383 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 CEP78Q5JTW2 689 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 FRMPD2BQ6IN97 320 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 OR4N4Q8N0Y3 316 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 AGBL5Q8NDL9 886 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 OR10G2Q8NGC3 310 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 SETD6Q8TBK2 473 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 IPCEF1Q8WWN9 437 aaPredicted RBP13.34□□□□□ -0.27
HMGA1-203ENST00000374116 ST6GAL2Q96JF0 529 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 SLC41A2Q96JW4 573 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 RNF170Q96K19 258 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 FEVQ99581 238 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 PDE7BQ9NP56 450 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 A4GALTQ9NPC4 353 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 TMEM184CQ9NVA4 438 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 ERVK-18Q9QC07 812 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 KCNN3Q9UGI6 736 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 POFUT2Q9Y2G5 429 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 A0A0A6YYD5 115 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 TMPRSS11DO60235 418 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 ANKRD34CP0C6C1 535 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 EPHA2P29317 976 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 XCR1P46094 333 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 OR1E2P47887 323 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 ALDH9A1P49189 494 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 HMGA2P52926 109 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 NCS1P62166 190 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 MRPS15P82914 257 aaKnown RBP13.33□□□□□ -0.28
HMGA1-203ENST00000374116 HYAL2Q12891 473 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 CDONQ4KMG0 1287 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF425Q6IV72 752 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 CEACAM20Q6UY09 585 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 SLC51BQ86UW2 128 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 GRAMD2AQ8IUY3 354 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 CCDC28AQ8IWP9 274 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 GALNT12Q8IXK2 581 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 D2HGDHQ8N465 521 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 ESX1Q8N693 406 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 ZBED6CLQ96FA7 236 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-203ENST00000374116 LIN37Q96GY3 246 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-203ENST00000374116 PIP5K1AQ99755 562 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 TMEM246Q9BRR3 403 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 TMEM121BQ9BXQ6 578 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-203ENST00000374116 SLAMF7Q9NQ25 335 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 ACSS1Q9NUB1 689 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-203ENST00000374116 TAS2R7Q9NYW3 318 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 MKLN1Q9UL63 735 aa13.33□□□□□ -0.28
HMGA1-203ENST00000374116 CAB39Q9Y376 341 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-203ENST00000374116 CCDC187A0A096LP49 1063 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 PRAMEF25A6NGN4 478 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TMEM150CB9EJG8 249 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 PLD2O14939 933 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 POLR1CO15160 346 aaPredicted RBP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 RGS10O43665 173 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 FAM20BO75063 409 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TIAF1O95411 115 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ADRB1P08588 477 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 JMJD7P0C870 316 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TNFRSF1BP20333 461 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 BCL6P41182 706 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ARFIP1P53367 373 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 CDH12P55289 794 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 GABREP78334 506 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TRA2AQ13595 282 aaKnown RBP eCLIP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 MLC1Q15049 377 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms