RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 DPP10Q8N608 796 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 SRFBP1Q8NEF9 429 aaKnown RBP3.32□□□□□ -1.88
MCF2-202ENST00000370573 Q8NFD4 153 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 GTF2H4Q92759 462 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 CIDECQ96AQ7 238 aaPredicted RBP3.32□□□□□ -1.88
MCF2-202ENST00000370573 TESCQ96BS2 214 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 ZNF501Q96CX3 271 aaPredicted RBP3.32□□□□□ -1.88
MCF2-202ENST00000370573 PERPQ96FX8 193 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 OR52E6Q96RD3 313 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 LMF1Q96S06 567 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 ZBTB18Q99592 522 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 DPYSL5Q9BPU6 564 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 SLC39A3Q9BRY0 314 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 CENPKQ9BS16 269 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 INPP5KQ9BT40 448 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 TRIM4Q9C037 500 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 EFCAB1Q9HAE3 211 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 PLEKHA2Q9HB19 425 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 IL1RL2Q9HB29 575 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 PCDHB16Q9NRJ7 776 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 OCIAD1Q9NX40 245 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 C5AR2Q9P296 337 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 FBXW2Q9UKT8 454 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 CES1P1Q9UKY3 287 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 C19orf53Q9UNZ5 99 aaPredicted RBP3.32□□□□□ -1.88
MCF2-202ENST00000370573 NDUFAF1Q9Y375 327 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 NAALAD2Q9Y3Q0 740 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 NEUROG3Q9Y4Z2 214 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 TMEM184BQ9Y519 407 aaPredicted RBP3.32□□□□□ -1.88
MCF2-202ENST00000370573 SNX5Q9Y5X3 404 aa3.32□□□□□ -1.88
MCF2-202ENST00000370573 TRBV5-3A0A0A0MS03 114 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 URADA6NGE7 173 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 GLOD5A6NK44 160 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CYR61O00622 381 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TXNDC9O14530 226 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ANGPT2O15123 496 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CHST10O43529 356 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TBX19O60806 448 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 RDH16O75452 317 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 OR2B3O76000 313 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TOX4O94842 621 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 SORBS2O94875 1100 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 AIFM1O95831 613 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 COX7A2P14406 83 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 PGM1P36871 562 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TSFMP43897 325 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 NUDT2P50583 147 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 MNAT1P51948 309 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 HNRNPFP52597 415 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 PPP5CP53041 499 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 LIM2P55344 173 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 PSME3P61289 254 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 MAT1AQ00266 395 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 DUSP2Q05923 314 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TGM3Q08188 693 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TOP3AQ13472 1001 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 SELPLGQ14242 412 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CAPRIN1Q14444 709 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 SYT16Q17RD7 645 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 GTDC1Q4AE62 458 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 COQ5Q5HYK3 327 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TCTE1Q5JU00 501 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 NDUFAF5Q5TEU4 345 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ZNF529Q6P280 563 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 HACD2Q6Y1H2 254 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 IKBIPQ70UQ0 350 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ABHD13Q7L211 337 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ANKRD46Q86W74 232 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 APLFQ8IW19 511 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 CLECL1Q8IZS7 167 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 FAM9CQ8IZT9 166 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 METTL27Q8N6F8 245 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 BMPERQ8N8U9 685 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 FAM47BQ8NA70 645 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 SLC38A9Q8NBW4 561 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 OR8J2Q8NGG1 315 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 PPCDCQ96CD2 204 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 KLHL29Q96CT2 875 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 MTERF3Q96E29 417 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 WWC2-AS2Q96NR7 200 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CSF3RQ99062 836 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 GPATCH1Q9BRR8 931 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 DUSP26Q9BV47 211 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 NLNQ9BYT8 704 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 C1orf21Q9H246 121 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 SLC25A32Q9H2D1 315 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 FGF21Q9NSA1 209 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CUTCQ9NTM9 273 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 LYARQ9NX58 379 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 CMTM6Q9NX76 183 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TAS2R7Q9NYW3 318 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 SLC25A37Q9NYZ2 338 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 VSX1Q9NZR4 365 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 SH3BP4Q9P0V3 963 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 LEF1Q9UJU2 399 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 PACSIN3Q9UKS6 424 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CNOT11Q9UKZ1 510 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 WBP11Q9Y2W2 641 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms