RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CCDC85CA6NKD9 419 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 RGS9O75916 674 aaPredicted RBP14.89□□□□□ -0.03
HMGA1-202ENST00000347617 ELK1P19419 428 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 ZP3P21754 424 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 PITPNBP48739 271 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 RNF144AP50876 292 aaPredicted RBP14.89□□□□□ -0.03
HMGA1-202ENST00000347617 CLCNKAP51800 687 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 CASP9P55211 416 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 CTBP2P56545 445 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 DPTQ07507 201 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 EXOSC2Q13868 293 aaKnown RBP14.89□□□□□ -0.03
HMGA1-202ENST00000347617 BCL2L15Q5TBC7 163 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 SLC27A4Q6P1M0 643 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 PODNL1Q6PEZ8 512 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 FAM83HQ6ZRV2 1179 aaPredicted RBP14.89□□□□□ -0.03
HMGA1-202ENST00000347617 OAFQ86UD1 273 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 OR11H7Q8NGC8 314 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 OR5AK3PQ8NH89 298 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 GNPDA2Q8TDQ7 276 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 RBPMSQ93062 196 aaKnown RBP14.89□□□□□ -0.03
HMGA1-202ENST00000347617 DTD2Q96FN9 168 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 MED8Q96G25 268 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 FOPNLQ96NB1 174 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 ERMAPQ96PL5 475 aaPredicted RBP14.89□□□□□ -0.03
HMGA1-202ENST00000347617 RIOK2Q9BVS4 552 aaKnown RBP14.89□□□□□ -0.03
HMGA1-202ENST00000347617 OSGEPL1Q9H4B0 414 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 ERVMER34-1Q9H9K5 563 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 MIEF1Q9NQG6 463 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 UCKL1Q9NWZ5 548 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 AHSPQ9NZD4 102 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 SLC9A8Q9Y2E8 581 aa14.89□□□□□ -0.03
HMGA1-202ENST00000347617 BCHEP06276 602 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 SULT1A3P0DMM9 295 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 SULT1A4P0DMN0 295 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 NPR2P20594 1047 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 MMP11P24347 488 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 GDI1P31150 447 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 CAV3P56539 151 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 SYTL3Q4VX76 610 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ACSM5Q6NUN0 579 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 PARM1Q6UWI2 310 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ERN2Q76MJ5 926 aaKnown RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 WDR53Q7Z5U6 358 aaPredicted RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 BCDIN3DQ7Z5W3 292 aaKnown RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 TPRA1Q86W33 373 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 IQCF1Q8N6M8 205 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 OR4K5Q8NGD3 323 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 FGF14Q92915 247 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 SCAMP4Q969E2 229 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 GLYATL1Q969I3 302 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ARRDC3Q96B67 414 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ZNF764Q96H86 408 aaPredicted RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 CAMK1GQ96NX5 476 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 GSX2Q9BZM3 304 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ZNF576Q9H609 170 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 RERGLQ9H628 205 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 PRSS16Q9NQE7 514 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 SLCO1C1Q9NYB5 712 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 SEC14L3Q9UDX4 400 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 A4GNTQ9UNA3 340 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 NPTNQ9Y639 398 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 TEX13CA0A0J9YWL9 993 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ANHXE9PGG2 379 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 KHNYNO15037 678 aaKnown RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 UBXN7O94888 489 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 IGHA1P01876 353 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 EPHX1P07099 455 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 C1GALT1C1LP0DN25 315 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ADRB3P13945 408 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 DNASE1P24855 282 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 SOX9P48436 509 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 DGKEP52429 567 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 TAS2R50P59544 299 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 PITPNAQ00169 270 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 RPA4Q13156 261 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 ZNF267Q14586 743 aaPredicted RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 LRRC73Q5JTD7 316 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 RAET1GQ6H3X3 334 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 BMP8AQ7Z5Y6 402 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 CMIPQ8IY22 773 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 TIGD4Q8IY51 512 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 TMEM159Q96B96 161 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 PRRC1Q96M27 445 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 DPCDQ9BVM2 203 aaPredicted RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 B3GNT4Q9C0J1 378 aa14.88□□□□□ -0.03
HMGA1-202ENST00000347617 IMP3Q9NV31 184 aaKnown RBP14.88□□□□□ -0.03
HMGA1-202ENST00000347617 DENND4AQ7Z401 1863 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 COL4A3Q01955 1670 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 CEP290O15078 2479 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 NINQ8N4C6 2090 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 SPINT1O43278 529 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 HRO43593 1189 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 TCRBP04435 133 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 ZNF250P15622 560 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 ATF4P18848 351 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-202ENST00000347617 IMPA1P29218 277 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 GRIN2CQ14957 1233 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 POU4F3Q15319 338 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 ZER1Q7Z7L7 766 aa14.87□□□□□ -0.03
HMGA1-202ENST00000347617 TBC1D19Q8N5T2 526 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms