RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SLC5A12Q1EHB4 618 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 TTLQ8NG68 377 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 CREB3L4Q8TEY5 395 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 PAQR8Q8TEZ7 354 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 CNOT9Q92600 299 aaKnown RBP8.23□□□□□ -1.09
RTN3-202ENST00000339997 L3HYPDHQ96EM0 354 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 CCDC32Q9BV29 185 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 POTEKPQ9BYX7 375 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 HRH4Q9H3N8 390 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 CCDC86Q9H6F5 360 aaKnown RBP8.23□□□□□ -1.09
RTN3-202ENST00000339997 EGLN3Q9H6Z9 239 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 NTN4Q9HB63 628 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.23□□□□□ -1.09
RTN3-202ENST00000339997 HCSTQ9UBK5 93 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 DHDHQ9UQ10 334 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 LSM5Q9Y4Y9 91 aaKnown RBP8.23□□□□□ -1.09
RTN3-202ENST00000339997 INSL5Q9Y5Q6 135 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 NOX1Q9Y5S8 564 aa8.23□□□□□ -1.09
RTN3-202ENST00000339997 IGLON5A6NGN9 336 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ZNF850A8MQ14 1090 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 KIAA0355O15063 1070 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 FABP7O15540 132 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 SCGB2A1O75556 95 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 WDPCPO95876 746 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 HMGN2P05204 90 aaKnown RBP8.22□□□□□ -1.09
RTN3-202ENST00000339997 MC3RP41968 323 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ART1P52961 327 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 NTHL1P78549 312 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 GALEQ14376 348 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 SYPL1Q16563 259 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ADPRMQ3LIE5 342 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 CHRFAM7AQ494W8 412 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 GLT8D1Q68CQ7 371 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 LEG1Q6P5S2 330 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 RFLNAQ6ZTI6 216 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 GPR26Q8NDV2 337 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 OR7G2Q8NG99 324 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ITPKCQ96DU7 683 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 SSX3Q99909 188 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 FAM83CQ9BQN1 747 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ACTR6Q9GZN1 396 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 BRF2Q9HAW0 419 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 STARD5Q9NSY2 213 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 TMEM184CQ9NVA4 438 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 RCE1Q9Y256 329 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 CORINQ9Y5Q5 1042 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 TRAV27A0A087WT01 109 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 E2F3O00716 465 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 RGS9O75916 674 aaPredicted RBP8.22□□□□□ -1.09
RTN3-202ENST00000339997 DNAJB5O75953 348 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 CNOT4O95628 575 aaKnown RBP8.22□□□□□ -1.09
RTN3-202ENST00000339997 F3P13726 295 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 VIPR2P41587 438 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 FRKP42685 505 aaPredicted RBP8.22□□□□□ -1.09
RTN3-202ENST00000339997 RAB5BP61020 215 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 HERV-K104P61576 105 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 DBPQ10586 325 aaPredicted RBP8.22□□□□□ -1.09
RTN3-202ENST00000339997 LIPIQ6XZB0 460 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 SCD5Q86SK9 330 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 PRR22Q8IZ63 422 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 RTP4Q96DX8 246 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 RBP7Q96R05 134 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 WDR83Q9BRX9 315 aaKnown RBP8.22□□□□□ -1.09
RTN3-202ENST00000339997 LINC00597Q9H2U6 94 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 TLR9Q9NR96 1032 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 EMC3Q9P0I2 261 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 GLS2Q9UI32 602 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 SLC7A7Q9UM01 511 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 KCNIP3Q9Y2W7 256 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 MYADML2A6NDP7 307 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ZNF840PA6NDX5 716 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ARHGAP33O14559 1287 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 ICMTO60725 284 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 H2BFMP0C1H6 154 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 SLC2A5P22732 501 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 IDUAP35475 653 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 LIPAP38571 399 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 SELENOVP59797 346 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 CXCR4P61073 352 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 RHEBQ15382 184 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 OR5M10Q6IEU7 315 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 FUNDC1Q8IVP5 155 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 KLHDC8AQ8IYD2 350 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 TMEM156Q8N614 296 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 GDPD1Q8N9F7 314 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 OR4D6Q8NGJ1 314 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 GPR78Q96P69 363 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 CDCP1Q9H5V8 836 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 GPATCH2Q9NW75 528 aa8.22□□□□□ -1.09
RTN3-202ENST00000339997 HMX2A2RU54 273 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 RFPL3O75679 317 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 HTR3BO95264 441 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 SIX6O95475 246 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 GALTP07902 379 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 RD3LP0DJH9 198 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 SNRPBP14678 240 aaKnown RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 FOSL1P15407 271 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 AMY2BP19961 511 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 CD34P28906 385 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 CAV2P51636 162 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms