RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ACSL1P33121 698 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 RPS27P42677 84 aaKnown RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 FAM109BQ6ICB4 259 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 CEACAM19Q7Z692 300 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 ZNF514Q96K75 400 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 OPALINQ96PE5 141 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 MICU1Q9BPX6 476 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 RPP25Q9BUL9 199 aaKnown RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 STUB1Q9UNE7 303 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 PADI2Q9Y2J8 665 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 STON1Q9Y6Q2 735 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 DOCK9Q9BZ29 2069 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 A0A087WUU8 490 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 B4DGG1 531 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 PROM1O43490 865 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 CHRM4P08173 479 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 CLUP10909 449 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 CHRNB1P11230 501 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 MAGEA2P43356 314 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ERVK-21P61565 698 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 CST6Q15828 149 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 LINC00471Q8N535 108 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ASB12Q8WXK4 309 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 NKD1Q969G9 470 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 OR2B2Q9GZK3 357 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 MYNNQ9NPC7 610 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ENAMQ9NRM1 1142 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 HCN3Q9P1Z3 774 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ATXN7L1Q9ULK2 861 aaPredicted RBP11.21□□□□□ -0.61
USP1-201ENST00000339950 SLC27A6Q9Y2P4 619 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ANKRD36A6QL64 1941 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 DOCK4Q8N1I0 1966 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 A0A1W2PR48 441 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 POM121BA6NF01 834 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 SCO1O75880 301 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ADAP00813 363 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 APODP05090 189 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 HOXB6P17509 224 aaKnown RBP11.21□□□□□ -0.61
USP1-201ENST00000339950 AHCYP23526 432 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 SSTR2P30874 369 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 MAGEB1P43366 347 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 FGFBP1Q14512 234 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 OR4C6Q8NH72 309 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 RSPRY1Q96DX4 576 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ZNF354BQ96LW1 612 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 GPA33Q99795 319 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 SLC25A18Q9H1K4 315 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 ABCG5Q9H222 651 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 HHATLQ9HCP6 504 aa11.21□□□□□ -0.61
USP1-201ENST00000339950 C1orf226A1L170 272 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 RLN1P04808 185 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 IGFBP4P22692 258 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 BCL6P41182 706 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 SRP9P49458 86 aaKnown RBP11.21□□□□□ -0.62
USP1-201ENST00000339950 ZNF81P51508 661 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 PDX1P52945 283 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 ST3GAL3Q11203 375 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 IRF4Q15306 451 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 NDUFAF6Q330K2 333 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 KLHL22Q53GT1 634 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 AGAP6Q5VW22 663 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 OR52I1Q8NGK6 324 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 RLN3Q8WXF3 142 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 AGAP4Q96P64 663 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 SLC7A5P2Q9GIP4 190 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 FN3KQ9H479 309 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 GALNT9Q9HCQ5 603 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 TMEM138Q9NPI0 162 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 AK6Q9Y3D8 172 aaKnown RBP11.21□□□□□ -0.62
USP1-201ENST00000339950 SPACA6W5XKT8 324 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 WDR90Q96KV7 1748 aa11.21□□□□□ -0.62
USP1-201ENST00000339950 AGAP14A8MT82 685 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 ICMTO60725 284 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 ADRA2AP08913 450 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 ACADLP28330 430 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 SHC1P29353 583 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 TRIM23P36406 574 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 BMPR1AP36894 532 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 TRMT12Q53H54 448 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 TMEM64Q6YI46 380 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 LINGO2Q7L985 606 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 KLHL36Q8N4N3 616 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 OR2L2Q8NH16 312 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 POP5Q969H6 163 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 SEMA4GQ9NTN9 838 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 NFKBIL1Q9UBC1 381 aaPredicted RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 GNG8Q9UK08 70 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 A0A0G2JMZ2 1700 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 LRRC37A2A6NM11 1700 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 TNS1Q9HBL0 1735 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 MEIS3P1A6NDR6 274 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 PTTG1O95997 202 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 DHFRP00374 187 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 RAB28P51157 221 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 RPA4Q13156 261 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 FXNQ16595 210 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 SYT14P1Q58G82 188 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 ENTPD8Q5MY95 495 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 TUBA3EQ6PEY2 450 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 CXXC5Q7LFL8 322 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms