RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 KLHL36Q8N4N3 616 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 OR10H4Q8NGA5 316 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 TTC9Q92623 222 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 TM4SF18Q96CE8 201 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 POLDIP3Q9BY77 421 aaKnown RBP6.44□□□□□ -1.38
SF3B1-201ENST00000335508 UCK1Q9HA47 277 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 CD93Q9NPY3 652 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 ATP13A2Q9NQ11 1180 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 OLAHQ9NV23 265 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 EXOSC1Q9Y3B2 195 aaKnown RBP6.44□□□□□ -1.38
SF3B1-201ENST00000335508 NPIPA5E9PKD4 350 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 ARHGEF9O43307 516 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 DIRAS1O95057 198 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 PEPDP12955 493 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 NID1P14543 1247 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 CASP9P55211 416 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 RBM44Q6ZP01 1051 aaKnown RBP6.44□□□□□ -1.38
SF3B1-201ENST00000335508 OR4C15Q8NGM1 316 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 ASB15Q8WXK1 588 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 MUS81Q96NY9 551 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 GORASP1Q9BQQ3 440 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 ANKRD60Q9BZ19 345 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 WDR12Q9GZL7 423 aaKnown RBP6.44□□□□□ -1.38
SF3B1-201ENST00000335508 C6orf62Q9GZU0 229 aaPredicted RBP6.44□□□□□ -1.38
SF3B1-201ENST00000335508 ANKRA2Q9H9E1 313 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 PCDH10Q9P2E7 1040 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 NPIPA1Q9UND3 350 aa6.44□□□□□ -1.38
SF3B1-201ENST00000335508 A0A1B0GW55 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 TRIM64A6NGJ6 449 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 TRIM64BA6NI03 449 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 KPNA4O00629 521 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DENRO43583 198 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 INMTO95050 263 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DUX4L2P0CJ85 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DUX4L3P0CJ86 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DUX4L4P0CJ87 422 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DUX4L5P0CJ88 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DUX4L6P0CJ89 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DUX4L7P0CJ90 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DBTP11182 482 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 KCNJ5P48544 419 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ROR2Q01974 943 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 EXT1Q16394 746 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SMARCD3Q6STE5 483 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CLEC1AQ8NC01 280 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 OR51Q1Q8NH59 317 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 GNPDA2Q8TDQ7 276 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 GLIPR2Q9H4G4 154 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DUX4Q9UBX2 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CBLCQ9ULV8 474 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PCDHGB2Q9Y5G2 931 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 IGHV1OR21-1A0A087WYE8 117 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 A0A1B0GTQ1 180 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CPSF4LA6NMK7 179 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SCO2O43819 266 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 MT-ND5P03915 603 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 FCARP24071 287 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 MYBPC1Q00872 1141 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CCNIQ14094 377 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 NNATQ16517 81 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 GPR107Q5VW38 600 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 OR9A2Q8NGT5 310 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 NAA11Q9BSU3 229 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PLEKHA1Q9HB21 404 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 USP36Q9P275 1121 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PCDHGB6Q9Y5F9 930 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 KCNE1BA0A087WTH5 132 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ARHGAP33O14559 1287 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ACOX3O15254 700 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PRODHO43272 600 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 TMPRSS11DO60235 418 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 THBS1P07996 1170 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PCYT1AP49585 367 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 HNRNPFP52597 415 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 IL11RAQ14626 422 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 C6orf52Q5T4I8 152 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CCDC80Q76M96 950 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 LRRC56Q8IYG6 542 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 UFD1Q92890 307 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF597Q96LX8 424 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SFXN2Q96NB2 322 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SARGQ9BW04 601 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 TPK1Q9H3S4 243 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CCDC187A0A096LP49 1063 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 MEGF11A6BM72 1044 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 A6NCN8 305 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 TRIM64CA6NLI5 447 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CLDN25C9JDP6 229 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF264O43296 627 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ACVR2AP27037 513 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 GSTT1P30711 240 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 LTBRP36941 435 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 OR1D4P47884 311 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SLC9A3P48764 834 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PLGLB1Q02325 96 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PIN1Q13526 163 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 GTF2IRD2BQ6EKJ0 949 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SLC30A6Q6NXT4 461 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 RAB11FIP2Q7L804 512 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 GTF2IRD2Q86UP8 949 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms