RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RIF1Q5UIP0 2472 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 RBM45Q8IUH3 476 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 LACC1Q8IV20 430 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 OR4N2Q8NGD1 307 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 OR6T1Q8NGN1 323 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 VANGL1Q8TAA9 524 aaPredicted RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 METTL21AQ8WXB1 218 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 NR1H4Q96RI1 486 aaPredicted RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 BARD1Q99728 777 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 ADI1Q9BV57 179 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 CXorf56Q9H5V9 222 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 AKIRIN1Q9H9L7 192 aaPredicted RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 PDP1Q9P0J1 537 aaPredicted RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 COPS7AQ9UBW8 275 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 KCNE5Q9UJ90 142 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 PPIEQ9UNP9 301 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 B3GALT1Q9Y5Z6 326 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 CSO75390 466 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 UGT2B17O75795 530 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 SMNDC1O75940 238 aaKnown RBP eCLIP13.06□□□□□ -0.32
SS18-201ENST00000269137 IGKV1D-16P01601 117 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 NID1P14543 1247 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 ITIH1P19827 911 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 SLC5A2P31639 672 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 ETV5P41161 510 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 GPR143P51810 404 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 SMIM11AP58511 58 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 EPS8Q12929 822 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 EIF3IQ13347 325 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 MAPK14Q16539 360 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.06□□□□□ -0.32
SS18-201ENST00000269137 COLEC12Q5KU26 742 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 RNF220Q5VTB9 566 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 FAHD1Q6P587 224 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 TMEM205Q6UW68 189 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 FAM198BQ6UWH4 519 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 ZAR1Q86SH2 424 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 CLIP4Q8N3C7 705 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 DHRSXQ8N5I4 330 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 NR4A3Q92570 626 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 ADIPOR1Q96A54 375 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 DEPDC7Q96QD5 511 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 TAAR9Q96RI9 348 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 MYCBPQ99417 103 aaPredicted RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 CRB3Q9BUF7 120 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 DDA1Q9BW61 102 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 EVA1AQ9H8M9 152 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 NMNAT1Q9HAN9 279 aaPredicted RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 TMEFF2Q9UIK5 374 aaPredicted RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 OR10H1Q9Y4A9 318 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 PCDHGA10Q9Y5H3 936 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 ZNF292O60281 2723 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 FRG2CA6NGY1 282 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 A6NHS1 94 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 NPIPB9F8W1W9 429 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 H0YAE9 185 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 GADD45GO95257 159 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 SNAP29O95721 258 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 FOXL2P58012 376 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 NPTX1Q15818 432 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 MICAQ29983 383 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 SLC36A3Q495N2 470 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 FLYWCH1Q4VC44 716 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 KDM4DQ6B0I6 523 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 FAAH2Q6GMR7 532 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 DEF8Q6ZN54 512 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 ZNF836Q6ZNA1 936 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 CHERPQ8IWX8 916 aaKnown RBP13.05□□□□□ -0.32
SS18-201ENST00000269137 BCORP1Q8N888 145 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 PIK3C3Q8NEB9 887 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 NFAM1Q8NET5 270 aaPredicted RBP13.05□□□□□ -0.32
SS18-201ENST00000269137 GIPC3Q8TF64 312 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 PHF10Q8WUB8 498 aaKnown RBP13.05□□□□□ -0.32
SS18-201ENST00000269137 OIT3Q8WWZ8 545 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 MR1Q95460 341 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 LCORQ96JN0 433 aaPredicted RBP13.05□□□□□ -0.32
SS18-201ENST00000269137 PSD2Q9BQI7 771 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 ANKRD60Q9BZ19 345 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 SEMA4CQ9C0C4 833 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 FAM86C1Q9NVL1 165 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 GPN3Q9UHW5 284 aaPredicted RBP13.05□□□□□ -0.32
SS18-201ENST00000269137 A4GNTQ9UNA3 340 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 PCDHGA3Q9Y5H0 932 aa13.05□□□□□ -0.32
SS18-201ENST00000269137 CCDC187A0A096LP49 1063 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 CENPVL1A0A0U1RR11 272 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 ARRDC5A6NEK1 342 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 SAGE2PA6NJ88 616 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 EIF4E1BA6NMX2 242 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 C9J4A7 227 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 PEX12O00623 359 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 HS6ST1O60243 411 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 H1F0P07305 194 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 DAPP51397 102 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 RAD23AP54725 363 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 PSMD4P55036 377 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 ADARB1P78563 741 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 LAPTM4AQ15012 233 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 EBPQ15125 230 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 ZNF141Q15928 474 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 DECR1Q16698 335 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms