RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CT45A2Q5DJT8 189 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 NAT6Q93015 286 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 VSTM2LQ96N03 204 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 ZNF350Q9GZX5 532 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 PAPOLBQ9NRJ5 636 aaKnown RBP15.3■□□□□ 0.04
USP4-201ENST00000265560 DUSP22Q9NRW4 184 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 TMCC3Q9ULS5 477 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 HCN4Q9Y3Q4 1203 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 AGAP5A6NIR3 686 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 LIMS1P48059 325 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 TARDBPQ13148 414 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP4-201ENST00000265560 C16orf47Q6ZP98 133 aaPredicted RBP15.29■□□□□ 0.04
USP4-201ENST00000265560 THAP3Q8WTV1 239 aaPredicted RBP15.29■□□□□ 0.04
USP4-201ENST00000265560 PRDM9Q9NQV7 894 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 PDP2Q9P2J9 529 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 EFCAB7A8K855 629 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 CCNYL3P0C7X3 344 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 IGLV3-21P80748 117 aaPredicted RBP15.29■□□□□ 0.04
USP4-201ENST00000265560 NKAIN4Q8IVV8 208 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 ZNF619Q8N2I2 560 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 CHDHQ8NE62 594 aaPredicted RBP15.29■□□□□ 0.04
USP4-201ENST00000265560 STT3BQ8TCJ2 826 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 NRBF2Q96F24 287 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 GPA33Q99795 319 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 CALML5Q9NZT1 146 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 FLRT3Q9NZU0 649 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 KCND3Q9UK17 655 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 ZNF232Q9UNY5 417 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 PCNX3Q9H6A9 2034 aa15.29■□□□□ 0.04
USP4-201ENST00000265560 URB1O60287 2271 aaKnown RBP15.29■□□□□ 0.04
USP4-201ENST00000265560 PNLIPP16233 465 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ZNF28P17035 718 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 MAP3K8P41279 467 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ZNHIT3Q15649 155 aaPredicted RBP15.28■□□□□ 0.04
USP4-201ENST00000265560 NADK2Q4G0N4 442 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ENTPD8Q5MY95 495 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ZNF691Q5VV52 312 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 COX15Q7KZN9 410 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 MCHR1Q99705 422 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ZNF556Q9HAH1 456 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 RARRES3Q9UL19 164 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 LOC400499M0QZD8 3231 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 C17orf51A8MQB3 221 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ADAM11O75078 769 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 THY1P04216 161 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 CNR2P34972 360 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 GCGRP47871 477 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 LARS2Q15031 903 aaKnown RBP15.28■□□□□ 0.04
USP4-201ENST00000265560 P3H2Q8IVL5 708 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ZNF615Q8N8J6 731 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 OR4C3Q8NH37 302 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 CDC14AQ9UNH5 594 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 PMS2P1A4D2B8 440 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 NKX2-2O95096 273 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 CLPSP04118 112 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ITIH1P19827 911 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 HMGA2P52926 109 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 RHAGQ02094 409 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 PLAURQ03405 335 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 KMT5CQ86Y97 462 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 OR4K5Q8NGD3 323 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 CNOT9Q92600 299 aaKnown RBP15.28■□□□□ 0.04
USP4-201ENST00000265560 MPDZO75970 2070 aa15.28■□□□□ 0.04
USP4-201ENST00000265560 ZNF292O60281 2723 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 MED12Q93074 2177 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 D6RAR5 112 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 BRINP1O60477 761 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 COQ9O75208 318 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 CSTF2P33240 577 aaKnown RBP eCLIP15.27■□□□□ 0.04
USP4-201ENST00000265560 DBPQ10586 325 aaPredicted RBP15.27■□□□□ 0.04
USP4-201ENST00000265560 NKAIN1Q4KMZ8 207 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 ZNF770Q6IQ21 691 aaPredicted RBP15.27■□□□□ 0.04
USP4-201ENST00000265560 FAM81AQ8TBF8 368 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 SLC2A12Q8TD20 617 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 RELTQ969Z4 430 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 C11orf16Q9NQ32 467 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 CNIH4Q9P003 139 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 IL20RAQ9UHF4 553 aa15.27■□□□□ 0.04
USP4-201ENST00000265560 PRRC2CQ9Y520 2896 aaKnown RBP15.27■□□□□ 0.03
USP4-201ENST00000265560 CCDC160A6NGH7 325 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 GNB5O14775 395 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 SLC16A6O15403 523 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 MAN1A2O60476 641 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 PRAMEF2O60811 474 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 ACY1Q03154 408 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 NEDD8Q15843 81 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 C6orf141Q5SZD1 244 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 PLEKHM3Q6ZWE6 761 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 C8orf44Q96CB5 159 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 RDH12Q96NR8 316 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 NUDT9Q9BW91 350 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 NXF5Q9H1B4 397 aaKnown RBP15.27■□□□□ 0.03
USP4-201ENST00000265560 KLHL28Q9NXS3 571 aa15.27■□□□□ 0.03
USP4-201ENST00000265560 H3BN98 237 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 KPNA4O00629 521 aaPredicted RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 AGR2O95994 175 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 CBLP22681 906 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 HOXD12P35452 270 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 NUDT6P53370 316 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 FUT7Q11130 342 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms