RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 IFT52Q9Y366 437 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 IGHV3-20A0A0C4DH32 117 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 AGAP5A6NIR3 686 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 SAGE2PA6NJ88 616 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 OR6C76A6NM76 312 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 SYT5O00445 386 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 TM4SF5O14894 197 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 KLF7O75840 302 aaPredicted RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 DIRAS1O95057 198 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 LGI1O95970 557 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 IFNW1P05000 195 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 PRKAR1BP31321 381 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 PIGAP37287 484 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 PPP4R4Q6NUP7 873 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 DHRS4L2Q6PKH6 230 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 CPEB2Q7Z5Q1 589 aaKnown RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 VRK2Q86Y07 508 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 PEX5LQ8IYB4 626 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 NFAM1Q8NET5 270 aaPredicted RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 DNAJC9Q8WXX5 260 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 ADIPOR1Q96A54 375 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 WDR77Q9BQA1 342 aaPredicted RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 VCXQ9H320 206 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 TRIM45Q9H8W5 580 aaPredicted RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 PADI1Q9ULC6 663 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 C15orf41Q9Y2V0 281 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 ENPP4Q9Y6X5 453 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 MUC6Q6W4X9 2439 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 SOCS2O14508 198 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 IGKV1D-16P01601 117 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 THBS1P07996 1170 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 ZNF23P17027 643 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 DRD5P21918 477 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 AQP4P55087 323 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 EBPQ15125 230 aaKnown RBP17.06■□□□□ 0.32
CLN3-254ENST00000637050 GPR68Q15743 365 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 C3orf38Q5JPI3 329 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 TMEM164Q5U3C3 297 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 TIPARPQ7Z3E1 657 aaKnown RBP17.06■□□□□ 0.32
CLN3-254ENST00000637050 ZAR1Q86SH2 424 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 CARM1Q86X55 608 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 C9orf40Q8IXQ3 194 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 CBR4Q8N4T8 237 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 PACRGLQ8N7B6 248 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 B3GNT7Q8NFL0 401 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 ZNF347Q96SE7 839 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 SEMA4CQ9C0C4 833 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 C8orf4Q9NR00 106 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 VNN3Q9NY84 501 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 C19orf25Q9UFG5 118 aaPredicted RBP17.06■□□□□ 0.32
CLN3-254ENST00000637050 CBLCQ9ULV8 474 aa17.06■□□□□ 0.32
CLN3-254ENST00000637050 CCDC88CQ9P219 2028 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 LOC102723996A0A087X1L8 192 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 FRG2CA6NGY1 282 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 H0YJX3 145 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 PDLIM1O00151 329 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 RASAL1O95294 804 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 UMODP07911 640 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 CD63P08962 238 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 CCNYL3P0C7X3 344 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 IST1P53990 364 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 DCAF7P61962 342 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 NNATQ16517 81 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 PAPD4Q6PIY7 484 aaKnown RBP17.05■□□□□ 0.32
CLN3-254ENST00000637050 SVOPLQ8N434 492 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 GALNT4Q8N4A0 578 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 OR4D11Q8NGI4 311 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 OR2Y1Q8NGV0 311 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 OR5K1Q8NHB7 308 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 LCORQ96JN0 433 aaPredicted RBP17.05■□□□□ 0.32
CLN3-254ENST00000637050 WFDC6Q9BQY6 131 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 NXF5Q9H1B4 397 aaKnown RBP17.05■□□□□ 0.32
CLN3-254ENST00000637050 FOXJ2Q9P0K8 574 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 KCNE5Q9UJ90 142 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 ZNF232Q9UNY5 417 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 ZNF443Q9Y2A4 671 aaPredicted RBP17.05■□□□□ 0.32
CLN3-254ENST00000637050 PTRH2Q9Y3E5 179 aaKnown RBP17.05■□□□□ 0.32
CLN3-254ENST00000637050 OR10H1Q9Y4A9 318 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 CHST2Q9Y4C5 530 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 AK5Q9Y6K8 562 aa17.05■□□□□ 0.32
CLN3-254ENST00000637050 CENPVL1A0A0U1RR11 272 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 C2orf92A0A1B0GVN3 265 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 DNAJB5O75953 348 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 DBIP07108 87 aaKnown RBP17.04■□□□□ 0.32
CLN3-254ENST00000637050 RHCEP18577 417 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 DCTP40126 519 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 TARDBPQ13148 414 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLN3-254ENST00000637050 LARS2Q15031 903 aaKnown RBP17.04■□□□□ 0.32
CLN3-254ENST00000637050 MAPK14Q16539 360 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 TMEM179BQ7Z7N9 219 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 ZDHHC13Q8IUH4 622 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 LACC1Q8IV20 430 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 BCORP1Q8N888 145 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 APCDD1LQ8NCL9 501 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 LPAR4Q99677 370 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 G6PC3Q9BUM1 346 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 B3GNT4Q9C0J1 378 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 CACYBPQ9HB71 228 aaKnown RBP17.04■□□□□ 0.32
CLN3-254ENST00000637050 SLC9A8Q9Y2E8 581 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 EP300Q09472 2414 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms